PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g09120 | ||||||||
Common Name | GSCOC_T00034294001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15085 Da PI: 6.5176 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.8 | 1.6e-14 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r +k +g+Wv+eIr+p g + r +lg++ +e Aa a++ a +l+ Cc10_g09120 17 RFRGIRLRK-WGKWVSEIRVP---G-TqDRLWLGSYAAPEAAAMAHDVAYYCLRE 66 79*****99.**********8...3.35************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.56E-15 | 16 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-22 | 17 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-23 | 17 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-15 | 17 | 74 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.322 | 17 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-7 | 17 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-7 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-7 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSSSDEGGSS CSTSQKRFRG IRLRKWGKWV SEIRVPGTQD RLWLGSYAAP EAAAMAHDVA 60 YYCLRENASL DDFNFPLMLP AGVQRGMSPR SVQKAATDAG MAVDAQIIAK HIPSWDGKEF 120 SRELGDQALN ISVDDYL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090665.1 | 2e-81 | ethylene-responsive transcription factor ERF020 | ||||
Swissprot | O80542 | 6e-41 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
Swissprot | Q9C9I8 | 6e-41 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A068TY53 | 3e-97 | A0A068TY53_COFCA; Uncharacterized protein | ||||
STRING | XP_009767328.1 | 3e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9494 | 20 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 1e-42 | ERF family protein |
Publications ? help Back to Top | |||
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