PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g08760
Common NameGSCOC_T00034343001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 210aa    MW: 23882.6 Da    PI: 8.4859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g08760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-123480455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  h ++Er+RR+++ + f  L +l+P +     kKl+Ka++Le A ++Ik+Lq
  Cc10_g08760 34 YHVQAERKRREKLSDLFIALSKLVPGL-----KKLDKASVLEDANKHIKELQ 80
                 6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.373079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-103380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-163495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-153592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-103584No hitNo description
SMARTSM003531.5E-123685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNNSSDENHF HFSEDEIVYN SRSPVRRTPI QAQYHVQAER KRREKLSDLF IALSKLVPGL  60
KKLDKASVLE DANKHIKELQ ERLKTLEEEK KNNSKAPEIM VERCIISTCS GNTSSFKGAT  120
LELLPEIKVK IQGKNVLVKI LCEKKYQGSI SSMSSELEKL HLTILDSRIL RFGCCTLDIT  180
LKAQVDNEFS VTMKDIIEHL QQGIFQLHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843ERKRRE
23944RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090177.11e-148transcription factor bHLH18-like
TrEMBLA0A068TX731e-150A0A068TX73_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-44bHLH family protein