PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g08490
Common NameGSCOC_T00034382001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 307aa    MW: 32365.8 Da    PI: 5.436
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g08490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.2e-17222257134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Cc10_g08490 222 CTHCGTSSksTPMMRRGPAGPRTLCNACGLFWANKG 257
                  *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-1088123IPR010399Tify domain
PROSITE profilePS5132013.68188123IPR010399Tify domain
PfamPF062001.2E-1292122IPR010399Tify domain
PfamPF062032.8E-15155196IPR010402CCT domain
PROSITE profilePS5101712.342155197IPR010402CCT domain
PROSITE profilePS5011411.016216272IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-13216269IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13218269No hitNo description
Gene3DG3DSA:3.30.50.101.7E-16220263IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.38E-16221266No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003204.7E-15222257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MYTPVQLVGP TNGHGQYSSH GGGDDVKAAV FGGGGGGRES IEDAEIVGFE DGGTIGGLDG  60
IEVSLPQNTT LYGGGGGGEG VAVAMPHGGD VANQLTLSFR GQVYVFDAVT AEKVQAVLSL  120
LGGCEYSPGT QAVDLPYQTS KSLMDYSGRC NDPKRVESLN RFRQKRKERC FEKKIRYNVR  180
QEVAMKMQRK KGQFAPRSSE DSVACDVAEE SGQIDNPPET SCTHCGTSSK STPMMRRGPA  240
GPRTLCNACG LFWANKGALR DLSKKTHAVT EEDEADSDSD YGTPISARGN LVSFSTSNSS  300
AVAAEQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148698.10.0GATA transcription factor 25-like
TrEMBLA0A068TXX60.0A0A068TXX6_COFCA; Uncharacterized protein
STRINGXP_010099559.16e-96(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-77GATA-type zinc finger protein with TIFY domain