PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g08200

Common Name

GSCOC_T00034425001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 312aa MW: 35126.9 Da PI: 4.5666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g08200	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	145	188	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Cc10_g08200 145 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 188 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	139	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	142	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.6E-12	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	145	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-15	146	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-4	146	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEFYSEHNFL EELLALRSEP WEGSVPMGLM NHDFYSNVFG SDLAADELSP PELTDSSCNK 60 LDTPQFPSQE DLSIMDDDDQ GLFAGNNNSV QSLELVRPPL CKVEELQEPF QSAEALVPLF 120 NMGMVCPERK NNKSKKLNGQ PSKNLMAERR RRKRLNDRLS MLRSVVPKIS KMDRTSILGD 180 TIDYMKELLE RINNIQEEKD VVSNQASLMS IFKDVKPNEV LVRNSPKFDV ERRNSDTRIE 240 ICCSGKPGLL LSTLTTLEAL GLEIQQCVIS CFNDFTVQAS CSEELEQRGI LSSEDIKQAL 300 FRNAGYGGRC L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	154	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027089827.1	0.0	transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-85	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A068TXG9	0.0	A0A068TXG9_COFCA; Uncharacterized protein
STRING	XP_010275502.1	1e-126	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-76	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]