PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07850
Common NameGSCOC_T00034473001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 353aa    MW: 40416.2 Da    PI: 6.4699
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-092803142155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Cc10_g07850 280 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 314
                  669*****************************885 PP
2ELK383.6e-13234255122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Cc10_g07850 234 ELKNHLLRKYSGYLSSLKQELS 255
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.4E-2389133IPR005540KNOX1
PfamPF037909.2E-2490132IPR005540KNOX1
SMARTSM012562.3E-27141192IPR005541KNOX2
PfamPF037911.3E-23145190IPR005541KNOX2
PROSITE profilePS5121311.296234254IPR005539ELK domain
SMARTSM011883.5E-7234255IPR005539ELK domain
PfamPF037892.4E-10234255IPR005539ELK domain
PROSITE profilePS5007112.876254317IPR001356Homeobox domain
SuperFamilySSF466891.58E-19255328IPR009057Homeodomain-like
SMARTSM003891.0E-12256321IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27259320IPR009057Homeodomain-like
CDDcd000861.26E-11266318No hitNo description
PfamPF059201.3E-16274313IPR008422Homeobox KN domain
PROSITE patternPS000270292315IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEYNHHLGE NTGPRGSFLY GGPVLAAPSS SQSEGQDHPI VKTEAGASSH HQHGQHKFQY  60
PSIIRSHQTV QDHHHQPHHQ ESEISGEVEA IKAKIIAHPQ YSNLLEAYMD CQKVGAPPEV  120
VARLTAARQE FEARQRASLV TGRDVNKDPE LDQFMEAYYD MLVKYREELT RPLQEAMEFM  180
RRVETQLNML GNGPVRIFNS DEKCEGVGSS EEDQDNSGGE TELPEIDPRA EDRELKNHLL  240
RKYSGYLSSL KQELSKKKKK GKLPKDARQK LLSWWELHYK WPYPSETEKV ALAESTGLDQ  300
KQINNWFINQ RKRHWKPSED MQFMVMDGLH AQNTALYMEG HYMGEGPYRL GP*
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089803.10.0homeotic protein knotted-1-like
SwissprotQ413300.0KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A068TXK40.0A0A068TXK4_COFCA; Uncharacterized protein
STRINGEOY156240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-134KNOTTED-like from Arabidopsis thaliana