PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07690
Common NameGSCOC_T00034491001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 315aa    MW: 34784.8 Da    PI: 8.3946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-1561112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cc10_g07690  61 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 112
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.256126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-5227IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-5228IPR016177DNA-binding domain
SuperFamilySSF541714.25E-1861122IPR016177DNA-binding domain
CDDcd000184.78E-2561122No hitNo description
PfamPF008475.1E-1061112IPR001471AP2/ERF domain
SMARTSM003801.7E-3462126IPR001471AP2/ERF domain
PROSITE profilePS5103219.01962120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1862120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEEKAARAYD LAALKYWGPS THINFPLENY QQELEGMKNM SRQEYVAHLR RKSSGFSRGA  60
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD  120
ISRYDVERIM ASNTLPAGEL ARRNKETEPN NETIAYANAA HKSEECFQPE RNANVSDWKM  180
APYQPPQQQQ NLPMDSFNEK IMNVVHYQNP SYSTALHGLI GIDSGNSSRG IVDESAKLGA  240
HFSNSSSLVT SLNSSREASP DRSGTSMLFA AKPTSAANYV NPTANVGSWI PSAQLKPVPI  300
SMAHLPVFAA WGDI*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092291.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-108CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A068TY520.0A0A068TY52_COFCA; Uncharacterized protein
STRINGEOY156531e-154(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-86AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]