PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07650
Common NameGSCOC_T00034496001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRF
Protein Properties Length: 613aa    MW: 65458.6 Da    PI: 8.1154
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07650genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24232276145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cc10_g07650 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 276
                  79****************************************985 PP
2QLQ613.4e-21164200137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q+++L++Q+l+yKy++an+P+P++Ll +i+k
  Cc10_g07650 164 GPFTPSQWMELEHQALIYKYINANMPIPSYLLSPIRK 200
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-12164200IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-15165199IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.451165200IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663232276IPR014977WRC domain
PfamPF088797.3E-21233275IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDFGVVSLDN GGGLMCSETT GFASSNTLPT TATTTSDAET KQKWYGSGFL KQERSAGTTT  60
AAAAEDDLRD LKVAKISPDD FSASKAMLFQ QRTPLLRSNS SCSNLFPEGL GHQQMLSFSS  120
PNSQSVTLPY YHHPSSIVYS RTTGYGSGGL NAGNMHGVPS GVRGPFTPSQ WMELEHQALI  180
YKYINANMPI PSYLLSPIRK ALDSAGFSSF AGLRPSAFGW GAFHIGFSNS TDPEPGRCRR  240
TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQPGH SVAGTTNNAA KLTPTSSASA  300
AVVPGGSASN SLGLLQTGAN VQCAASPQLD RTFLEKENLG GRIQDTTGLS MISRRINLKD  360
NQYPLPKPQN PYQQSSRGEF GQVCSDSLLN PLDRSSSLVN CSNYGTCEEV NDHESKSRTG  420
LRQFMDDWPN NRTERSSVVS WPDIDLHSDR TQLSISISMA ASDFMSSTSS PTNEKVASSP  480
LRLSREVEAT QMGLGVGTTV NDRTHRQANW IPISWESSMG GPLAEVLHST NNGTSESKSA  540
SALNLMTEGW DGSPQLASSP TGVLQKAAFV SRSNSSTGSS PRAEASKAHE GGSLCSGSVL  600
GSTLVNPALP AL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091526.10.0growth-regulating factor 1-like
TrEMBLA0A068TXM50.0A0A068TXM5_COFCA; Uncharacterized protein
STRINGEOY156570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-107growth-regulating factor 1