PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g06580
Common NameGSCOC_T00034636001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 354aa    MW: 38967.6 Da    PI: 6.008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g06580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12137188155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ +r+++P++   + ++ + a+i   A++++k+L+
  Cc10_g06580 137 QRMTHIAVERNRRKQMNDYLAVIRSMMPPS---YVQRGDQASIIGGAINFVKELE 188
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.51E-11135192No hitNo description
SuperFamilySSF474593.4E-16135210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.475136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12137203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MALDAAIHVQ DSFGYFFKEF YTLGGGGANG GGANGGWGYG YGFGLQEEKG FVEMLDSGMD  60
HNLHGNWESS SSSVVMQNVK EWDPNSSPEA CTADQLLLEG GSPAMEEPPE SASTPAAGKR  120
KRRRARTCKN KEELENQRMT HIAVERNRRK QMNDYLAVIR SMMPPSYVQR GDQASIIGGA  180
INFVKELEQH LQTLEAQRRR NSQQEQENGT SPPLFADFFT FPQYSTRSSS TTLHSNTINS  240
PVTTTTSDHQ PQPSRAATDQ NPSALADIEV TMAESHANLK ILSKRRPRQL LKLVAGLQLL  300
WLTVLHLNVT TTLDQKVLYS ISVKLEEGCQ LTTIDEIADA VNHLLGRIEE GAV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123KRKRRR
2119123RKRRR
3137148RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090909.10.0transcription factor bHLH94-like
TrEMBLA0A068U0I70.0A0A068U0I7_COFCA; Uncharacterized protein
STRINGXP_010272971.11e-132(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-64bHLH family protein