PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g06180 | ||||||||
Common Name | GSCOC_T00034693001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20955.2 Da PI: 5.3356 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 59 | 105 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 ++y GVr++ +gr++AeIr p++ + r++lg+f+taeeAa a++ a Cc10_g06180 59 TRYLGVRRRQ-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLASI 105 5799***887.**********865...5*******************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.1E-27 | 60 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-18 | 60 | 118 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-9 | 60 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.481 | 60 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-25 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.76E-25 | 61 | 117 | No hit | No description |
PRINTS | PR00367 | 2.8E-8 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-8 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSFASINYKP RSFWFLGSRS LNTYTYCLAS QEKPGPNNME NFSQMVARDQ GRRSSRRSTR 60 YLGVRRRQWG RYAAEIRNPY TKERHWLGTF DTAEEAAVAY DLASISFSGI QKARTNFVYP 120 FLALPSPSPS PPSPPPPPPP TPDLEEVDQS CAEVSSFEDD DDESLFIASV LESFRQSSFD 180 GTQKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 49 | 121 | 2 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027092344.1 | 1e-109 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A068U0M5 | 1e-133 | A0A068U0M5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056527 | 9e-48 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 3e-28 | ERF family protein |