PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g05640 | ||||||||
Common Name | GSCOC_T00034784001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 20887.7 Da PI: 4.9567 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.9 | 9.9e-31 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlrr+C+++C+l+p++ p++q++++ +v k+FG+s ++++++a+p+++++++++sl+yeA+ r+ +Pv+Gavg+++++++ ++++++e Cc10_g05640 2 SCNGCRVLRRGCSDKCALRPCLgriptPQAQANATLFVSKFFGRSDLMSFITAVPDSKKPALFQSLLYEACGRTVNPVSGAVGLLSTGNWPVCEAAVE 99 6************************9999*******************************************************************99 PP DUF260 94 lallk 98 ++l++ Cc10_g05640 100 TVLAG 104 98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.22 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSCNGCRVLR RGCSDKCALR PCLGRIPTPQ AQANATLFVS KFFGRSDLMS FITAVPDSKK 60 PALFQSLLYE ACGRTVNPVS GAVGLLSTGN WPVCEAAVET VLAGGTLRPV SGVGVLSPDS 120 NEASEAFCNS GGLWRVQPPF FMHGSDGDEM MVEFESDQNM SASASFRSSE ASDVWGSFGS 180 CGIEGVGGKE PKLLNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027149787.1 | 1e-141 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9FN11 | 1e-56 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A068TYW9 | 1e-142 | A0A068TYW9_COFCA; Uncharacterized protein | ||||
STRING | XP_009606111.1 | 2e-68 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-58 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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