PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g05320
Common NameGSCOC_T00034824001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 312aa    MW: 35810.6 Da    PI: 5.6486
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g05320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-27958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 k+ie+++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  Cc10_g05320  9 KKIESTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSVFS 58
                 68********************************************9886 PP
2K-box21.78.6e-09109172972
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                    +++ e+ qqe+ + k+++e +++++R + G+  e  ++ e +  eq Le+ l+++R++K +l
  Cc10_g05320 109 SVDSQIEEIQQEILRYKSQMEDMEKKLRIYEGDPWEINTICEAEYREQILEETLNQVRARKVNL 172
                  567889*******************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.1161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-30282IPR002100Transcription factor, MADS-box
CDDcd002651.55E-37275No hitNo description
PRINTSPR004044.7E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.52114200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRVKLQIKK IESTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSVFSGN  60
KSLEEIMARY LNLPEHERGR LHNQEYLEKA LGKLKSEADR TNQDVSPVSV DSQIEEIQQE  120
ILRYKSQMED MEKKLRIYEG DPWEINTICE AEYREQILEE TLNQVRARKV NLAQQAAQVN  180
GFTTRSASSI LDWFPHQRDQ DQIPMLNFLD PTGLIPLRAG QADQRIENMV PASLTLPPQS  240
HMDTAADMQQ QLNDHNSPIS KIENDPQVLQ RPHDDHFGQI IDVNLSPWTH LYPTDQLQMI  300
PQRSSFMALF N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-17177177Myocyte-specific enhancer factor 2B
1tqe_Q6e-17177177Myocyte-specific enhancer factor 2B
1tqe_R6e-17177177Myocyte-specific enhancer factor 2B
1tqe_S6e-17177177Myocyte-specific enhancer factor 2B
6c9l_A6e-17177177Myocyte-specific enhancer factor 2B
6c9l_B6e-17177177Myocyte-specific enhancer factor 2B
6c9l_C6e-17177177Myocyte-specific enhancer factor 2B
6c9l_D6e-17177177Myocyte-specific enhancer factor 2B
6c9l_E6e-17177177Myocyte-specific enhancer factor 2B
6c9l_F6e-17177177Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4832310.0KJ483231.1 Coffea arabica Md (Md) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091235.10.0agamous-like MADS-box protein AGL104
RefseqXP_027149857.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM468e-52AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A068TZA70.0A0A068TZA7_COFCA; Uncharacterized protein
STRINGVIT_18s0001g09540.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-54AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]