PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04940
Common NameGSCOC_T00034874001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 333aa    MW: 35712.6 Da    PI: 10.0847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.73.5e-201459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
      Cc10_g04940 14 KGPWSPEEDELLQRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59
                     79******************************.***********985 PP
2Myb_DNA-binding55.31.5e-1768110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ede++++a++++G++ W+tIar +  gRt++ +k++w++ 
      Cc10_g04940  68 AFTADEDEKIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.626964IPR017930Myb domain
SuperFamilySSF466897.19E-3211107IPR009057Homeodomain-like
SMARTSM007172.5E-181362IPR001005SANT/Myb domain
PfamPF002495.7E-201459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-261567IPR009057Homeodomain-like
CDDcd001671.43E-171658No hitNo description
SMARTSM007176.2E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129421.00166115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2268114IPR009057Homeodomain-like
CDDcd001672.29E-1268111No hitNo description
PfamPF002491.5E-1468110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGTIAHRKES DRIKGPWSPE EDELLQRLVE KHGPRNWSLI SKSIPGRSGK SCRLRWCNQL  60
SPQVEHRAFT ADEDEKIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRRCSSMSD  120
DFNFEVPQQP LKRSASVGPG TNVSAIYVNP SSPSGSDLSD SSLSGFGSGH VFRPLALTGG  180
ISPPVQQIET LSAAAPDPPT SLTLSLPGSS SAKSPTQNSK PPPPPPPPPP PPPLAPAPPT  240
PMAPPQAAPV APPQSQGGFV YPVPAPAPAP APMPGQVAER QFFSQEFLGV LQEMIRKEVR  300
SYMSGIEQNG MCMQTEAIRN AVVKRIGISK ID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-39131143104C-Myb DNA-Binding Domain
1msf_C1e-39131143104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148424.10.0transcription factor MYB44-like
SwissprotO231609e-93MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A068TZ170.0A0A068TZ17_COFCA; Uncharacterized protein
STRINGPOPTR_0002s12410.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-72myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]