PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04810
Common NameGSCOC_T00034890001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 363aa    MW: 39555.6 Da    PI: 10.0187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31290347359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Cc10_g04810 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYEGEHNHS 347
                  99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-18238286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33276347IPR003657WRKY domain
PROSITE profilePS5081130.503283349IPR003657WRKY domain
SuperFamilySSF1182903.79E-27285348IPR003657WRKY domain
SMARTSM007748.6E-38288348IPR003657WRKY domain
PfamPF031063.8E-27290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAVELMTGFR NDTFASKMEE NAVQEAATAG LQSVEKLIRL LSQSQSQPSQ IYQDPSSKQS  60
SDYQAVADAA VNKFKKFISL LDRTRTGHAR FRRGPVTNPP QPAPPLPPTQ QPEQPQPQRQ  120
PPQSNPAATS QPANNLFQED DKEKVKSSSR IYCPTPIQGL PPLPHNHHQL MKNVNIERKE  180
STTTINFAAA SPVNSFMSSL TGDTESLQPS MSSGFQITNL SSHVSSAGKP PLSTSSLKRK  240
CSSMDDSAVK CGGAASSGGR CHCPKKRKSR VKRVVRVPAI SMKMADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSLRGC PARKHVERAL DDPTMLIVTY EGEHNHSHSA TEAPGALVLE  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21276346271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092449.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A068TYC90.0A0A068TYC9_COFCA; Uncharacterized protein
STRINGXP_009604893.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.16e-89WRKY DNA-binding protein 7