PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g04710 | ||||||||
Common Name | GSCOC_T00034903001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16757.7 Da PI: 8.4742 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Cc10_g04710 24 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 73 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.2E-36 | 24 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.997 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 24 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.97E-27 | 25 | 82 | No hit | No description |
Pfam | PF00847 | 1.4E-10 | 25 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEGGCCSSTE KRKERENHHQ QEKPYRGIRM RKWGKWVAEI REPNKRSRIW LGSYSSPVAA 60 ARAYDTAVFY LRGPSARLNF PECIVEDDEL HDLSAAAIRK RATEVGARVD ALQQTAVHAS 120 STKSNSTPPR LEKPDLNEYP SPETSDDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 23 | 81 | 4 | 63 | ATERF1 |
3gcc_A | 6e-15 | 23 | 81 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00401 | DAP | Transfer from AT3G50260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090667.1 | 1e-108 | ethylene-responsive transcription factor ERF011-like | ||||
Refseq | XP_027093174.1 | 1e-108 | ethylene-responsive transcription factor ERF011-like | ||||
Refseq | XP_027149273.1 | 1e-108 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9SNE1 | 2e-51 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A068TYD8 | 1e-106 | A0A068TYD8_COFCA; Uncharacterized protein | ||||
STRING | XP_008452588.1 | 2e-74 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 7e-54 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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