PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04630
Common NameGSCOC_T00034913001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 317aa    MW: 33849.3 Da    PI: 5.0041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04630genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16135181455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Cc10_g04630 135 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 181
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-19128188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-20129190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-18134185No hitNo description
PfamPF000108.2E-14135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSDPYGTDDR SSFEPDSEPG GPPEPEDMNV FLHNLFQNSP ATAGSSSLYR GSASMINSSS  60
AASFDFSDPG GFFAGEVKGR LEKTFSLAAA ADCDAVTSSM DRGEFSGANK GLEASDAAIN  120
QAQPRSTKRS RSAEVHNLSE KRRRSRINEK LKALQNLIPN SNKTDKASML DEAIEYLKQL  180
QLQVQMLTIR NGLSFHPNYV SGSLQPMQLP MDFNEGDVMP NTSGGKHTLS SNQEVAMQSA  240
FGVSNPKISS QQLAIASMTN NSSSAFSFGL QSSAQNNPGV PNYLASAKDL CREDTLMQFP  300
LDISRSGNNS SSGVSS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090123.10.0transcription factor SPATULA-like
TrEMBLA0A068U1260.0A0A068U126_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-37bHLH family protein