PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g03720 | ||||||||
Common Name | GSCOC_T00024909001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Dof | ||||||||
Protein Properties | Length: 213aa MW: 21360.3 Da PI: 8.4868 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.3e-39 | 23 | 82 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+ +ss Cc10_g03720 23 PEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNVPVGGGSRKSSSSS 82 57899**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-23 | 22 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-33 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.478 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSSETGDPRP ARLSTMATRP SEPEHLPCPR CDSTNTKFCY YNNYNLSQPR HFCKSCRRYW 60 TRGGTLRNVP VGGGSRKSSS SSSSSSSSSN KRPRTTSGTN SPTATTPTAS SSSDSGYGLG 120 PGLHGLGFGL GGMDWPMESV VAGQGNGGGV GGAGVGVGGG DGISDGSGAG GSSSSGCNNT 180 WQMGSGVEGG LAEGDCFGWP DLAISMPGKG LK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009769 | 7e-43 | AP009769.1 Lotus japonicus genomic DNA, clone: LjT13A22, TM1930, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093939.1 | 1e-67 | dof zinc finger protein DOF3.4-like | ||||
Refseq | XP_027149276.1 | 1e-67 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A068UH66 | 1e-147 | A0A068UH66_COFCA; Uncharacterized protein | ||||
STRING | XP_010263782.1 | 2e-57 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 5e-32 | OBF binding protein 1 |