PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g03650
Common NameGSCOC_T00024897001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 881aa    MW: 98159.1 Da    PI: 7.7835
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g03650genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.42.4e-31131184255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cc10_g03650 131 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 184
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.88E-15128185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27129185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23131184IPR006447Myb domain, plants
PfamPF002492.0E-6132183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.630.104.6E-126379873IPR001128Cytochrome P450
PfamPF000678.6E-89396859IPR001128Cytochrome P450
SuperFamilySSF482645.5E-122399873IPR001128Cytochrome P450
PRINTSPR004633.2E-32425444IPR002401Cytochrome P450, E-class, group I
PRINTSPR004633.2E-32449470IPR002401Cytochrome P450, E-class, group I
PRINTSPR004633.2E-32546564IPR002401Cytochrome P450, E-class, group I
PRINTSPR004633.2E-32666683IPR002401Cytochrome P450, E-class, group I
PRINTSPR003857.3E-10677694IPR001128Cytochrome P450
PRINTSPR004633.2E-32686712IPR002401Cytochrome P450, E-class, group I
PRINTSPR004633.2E-32729747IPR002401Cytochrome P450, E-class, group I
PRINTSPR003857.3E-10730741IPR001128Cytochrome P450
PRINTSPR004633.2E-32771795IPR002401Cytochrome P450, E-class, group I
PRINTSPR004633.2E-32809819IPR002401Cytochrome P450, E-class, group I
PRINTSPR003857.3E-10810819IPR001128Cytochrome P450
PROSITE patternPS000860812821IPR017972Cytochrome P450, conserved site
PRINTSPR004633.2E-32819842IPR002401Cytochrome P450, E-class, group I
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004497Molecular Functionmonooxygenase activity
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MRNTGSSFPD LSLQISPPSL RNYDIKEVGY EIGLMVKSSY PSDRSSTTDS GSCGSDLSHE  60
NGGFDPERSL SYPSVDPTLS LGFDMAVSNP LPLQTPRNFQ AYHHYQPQIY GRDFKRNSRM  120
INGLKRSVRA PRMRWTSTLH AHFVHAVQLL GGHERATPKS VLELMNVKDL TLAHVKSHLQ  180
MYRTVKSTDK GAAGPIGQTD VVLSQRTGMA EVESLEAGVE LSCEKAGSNP AANSINISLP  240
SSSPSLPTTL HNAQRPSCEL PPRTNIWCHP SQENSLRCYQ HGDKDTKGAG IDSLHHMSGK  300
MEKKLDSNST NRSMLASSDM LLNLEFTLGR SSWQLDHDAN NTTEKLFLNL VLGGMMEWSF  360
QHLNAAAVGL LAFSFFLVYF FFNKDAKKHG SVPPEAGGAW PIIGHLHLLG RGPERLPHIT  420
LAALAEKYGP AFTIRLGVHK NLVVSSWELA KEIFTTHDLA AASRPNSLAS ELLSYGYASF  480
GFAPYGDYWR EMRKVISIEL LSTKRLELLK HVRISETDLS TKDLYNLWNS SSGPVLVEMK  540
QWFADLTLNV ILRMVVGKRF FGAADVSEEK EAKVCQKVMR EFFYLTGLFV LADSVPYLRW  600
LDWGGYERKM KVNAQEVDRL ADGWLKEHRR KKHSGEATSD HQDFMDVMLS LTEGADFSAG  660
YDADTITKAT CVGLISGGSD TTVVMLTWTL SLIMNNPRVL KKAQEELDLH VGKERRVTES  720
DISNLVYLQA IIKETLRLYP PGPLGGTREL SEDCIIGGYH IPKGTRVILN MWKIQRDPNV  780
WHDGPLEFRP ERFLTTHKHI DVKGYHFELI PFGAGRRICP GINLGLQMLH LVLANLLHAF  840
DLSTPSNEPV DMTESAGLTN IKATPLQLLV APRLPPHLYS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ylw_A9e-703708696490Ferruginol synthase
5ym3_A9e-703708696490Ferruginol synthase
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fungal elicitor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091560.10.0cytochrome P450 CYP82D47-like
SwissprotO498580.0C82A3_SOYBN; Cytochrome P450 82A3
TrEMBLA0A068UG960.0A0A068UG96_COFCA; Uncharacterized protein
STRINGVIT_18s0001g11500.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-51G2-like family protein
Publications ? help Back to Top
  1. Schopfer CR,Ebel J
    Identification of elicitor-induced cytochrome P450s of soybean (Glycine max L.) using differential display of mRNA.
    Mol. Gen. Genet., 1998. 258(4): p. 315-22
    [PMID:9648734]