PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g02500

Common Name

GSCOC_T00024754001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 442aa MW: 47788.2 Da PI: 8.3619

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g02500	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.2e-05	332	370	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Cc10_g02500 332 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 370 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.706	320	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.12E-5	330	374	No hit	No description
SuperFamily	SSF47459	1.13E-10	330	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-9	334	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTTTLGASG FGAALSSHAW TPNTNLNSAG 60 FGSAANTAIL NSRNPRLQND ILVSSLNGSM TQDFSFSWAN GSSGNNFTNQ SSHDLQLEMI 120 KREFSESYSN FSEMISSPSS SIEDVQLPIQ ATDYRRSEYR EINDPNVKLL LRSLSSGDRN 180 NDFHRSCPGE LYCSTSSSSS LGATPKRGTF SQIYPTINVS EINQTSLANS SSFHMNSQAL 240 DLLNSARFSG IFCLPMVDQL GLSKNGSLSY GYDYLSQSIP MPISEPSNIT PLSNGVTETK 300 WSDISLEPKV PQAAPKRSRS ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM 360 EAIGYIKFLQ NQVETLSVPY LKSSRNKSSR TVHGGAVENG GEERKRDLRS RGLCLVPMSC 420 LSYVADGGGG VWPPPSFGGG T*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTTTLGASG FGAALSSHAW TPNTNLNSAG  60
FGSAANTAIL NSRNPRLQND ILVSSLNGSM TQDFSFSWAN GSSGNNFTNQ SSHDLQLEMI  120
KREFSESYSN FSEMISSPSS SIEDVQLPIQ ATDYRRSEYR EINDPNVKLL LRSLSSGDRN  180
NDFHRSCPGE LYCSTSSSSS LGATPKRGTF SQIYPTINVS EINQTSLANS SSFHMNSQAL  240
DLLNSARFSG IFCLPMVDQL GLSKNGSLSY GYDYLSQSIP MPISEPSNIT PLSNGVTETK  300
WSDISLEPKV PQAAPKRSRS ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM  360
EAIGYIKFLQ NQVETLSVPY LKSSRNKSSR TVHGGAVENG GEERKRDLRS RGLCLVPMSC  420
LSYVADGGGG VWPPPSFGGG T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027094753.1	0.0	transcription factor bHLH110-like isoform X2
TrEMBL	A0A068UFY4	0.0	A0A068UFY4_COFCA; Uncharacterized protein
STRING	VIT_18s0001g12970.t01	1e-144	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	3e-67	bHLH family protein