PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g02410
Common NameGSCOC_T00024743001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 435aa    MW: 48638.4 Da    PI: 6.3968
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g02410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.3e-103613981954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Cc10_g02410 361 FEHflHPYPNDSEKLTLASQTGLSKNQVSNWFINARVR 398
                  664459******************************88 PP
2BELL104.57.1e-34223294172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e++elq+k  kL+ lleeV++rY+qy++ +  ++ssFe++aglg+ k+Yt+lAl+a+SrhF cL++ai +qi
  Cc10_g02410 223 EKHELQAKLLKLIALLEEVERRYEQYYHHMDELVSSFEMIAGLGAGKSYTALALQAMSRHFCCLREAILSQI 294
                  689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-32155292IPR006563POX domain
PfamPF075262.2E-39161290IPR006563POX domain
PROSITE profilePS5007112.05339402IPR001356Homeobox domain
CDDcd000861.78E-11342403No hitNo description
SMARTSM003891.4E-9342406IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-26347408IPR009057Homeodomain-like
SuperFamilySSF466892.48E-17348409IPR009057Homeodomain-like
PfamPF059202.9E-17359398IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVSQDSPSNP NTSILHQFII SNSIASQNQF GGEHFDAYAN GLSGGSTYDS LGSTPSLQCF  60
GERIPRSIDI VNAPQLTDES DVNHPRHLMD LLGASNEANY HAQRLSLSLG THNAREACNP  120
RGDSINSSYS FGGSVFAASS TSPNHQSSCI SYGTEALAVA ISNSKYLRPA QWLLDEVVKV  180
GSKAIDLSNE KYARRLSSSS KRGSLKLRSE INLEFTNNEV FTEKHELQAK LLKLIALLEE  240
VERRYEQYYH HMDELVSSFE MIAGLGAGKS YTALALQAMS RHFCCLREAI LSQIYVTKRK  300
ISEDMPKISS DMSQLSLFDQ ENRHSRLSLQ QLSMIQSSRQ AWRPIRGLPE TSVAILRSWL  360
FEHFLHPYPN DSEKLTLASQ TGLSKNQVSN WFINARVRLW KPMIEEMYKE EFAESYVESN  420
PSISREGFAD SAED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-16348406563Homeobox protein Meis2
4xrm_B5e-16348406563Homeobox protein Meis2
4xrs_A4e-16348405158Homeobox protein Meis1
4xrs_B4e-16348405158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091217.10.0BEL1-like homeodomain protein 11 isoform X2
SwissprotQ1PFD13e-93BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A068UG590.0A0A068UG59_COFCA; Uncharacterized protein
STRINGVIT_18s0001g13130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-77BEL1-like homeodomain 11