PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g02270 | ||||||||
Common Name | GSCOC_T00024726001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27914.6 Da PI: 7.434 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r r +lg+f+t eAa a++aa++kl+g Cc10_g02270 39 AYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTSHEAAIAYDAAARKLYG 88 59****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 38 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-33 | 39 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.076 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 39 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-9 | 40 | 51 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-19 | 40 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 40 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDADRSGNGN GRPGKKPAQA SSRKGCMRGK GGPENASCAY KGVRQRTWGK WVAEIREPNR 60 GSRLWLGTFD TSHEAAIAYD AAARKLYGTA AKLNLPHLYR RPQHIPVYST LNTTTPIDTG 120 GENQTGLRPV PFQQSPFRNF ASSSNSSYPP QCQPNERLFF QTETNATTTG YLAGTTTAGV 180 TSVPNDNNNF VDDNGNEAVE SEEGTMRGMW NKLNANLPAI DDSSIWAEAQ AASPFQAAVT 240 DPGIFGGNFE DSNYPWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-17 | 40 | 99 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027148674.1 | 0.0 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A068UGP5 | 0.0 | A0A068UGP5_COFCA; Uncharacterized protein | ||||
STRING | XP_009621512.1 | 4e-59 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-47 | ERF family protein |