PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc10_g01970

Common Name

GSCOC_T00024690001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 435aa MW: 46885.4 Da PI: 8.7018

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc10_g01970	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	4e-11	286	344	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK+ +i eLe kv +L++e ++L +l l+k ++l++++ Cc10_g01970 286 KRAKRVLANRQSAARSKERKLRYISELEHKVLTLQTEATTLSAQLTVLQKDFSELTNQN 344 9******************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.8E-17	282	346	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.887	284	347	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-10	286	338	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.6E-11	286	343	No hit	No description
Pfam	PF00170	4.2E-10	286	344	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.13E-21	287	336	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MAQLNCKQPM NQNYGAGSSH SRSTSQPAFF ANHSLPPLSP LPHSESSLAS NSSIKDVSMD 60 EVDVSSRVPP VVGNFEGLPP RKGHRRSSSD VPLGFNVMIQ TSPQLVPISG QGISGKTAFG 120 SDKVGMDKAI HLQKQEMDAI SEDSLNPSRT DEKDKRSMVS GMKKCGGENS NTEAQSISKA 180 NSTKFDGTGS AEGNKRSAIG DIAPAARHFR SLSVDSAFGS LHFNEVSPKL PSAAGIHVSQ 240 LSPSNLASEN SAKFSLDFGN AEFSEAEVKK IMTDERLAEI ALSDPKRAKR VLANRQSAAR 300 SKERKLRYIS ELEHKVLTLQ TEATTLSAQL TVLQKDFSEL TNQNNELKFR LQAMEQQARL 360 RDALHEALTA EVQRLKLAAA ELGEDDGSST SMIQQLPMKH HVLQLQHHQS SQIQQLSVAT 420 SKTATTTSAT PTSA*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MAQLNCKQPM NQNYGAGSSH SRSTSQPAFF ANHSLPPLSP LPHSESSLAS NSSIKDVSMD  60
EVDVSSRVPP VVGNFEGLPP RKGHRRSSSD VPLGFNVMIQ TSPQLVPISG QGISGKTAFG  120
SDKVGMDKAI HLQKQEMDAI SEDSLNPSRT DEKDKRSMVS GMKKCGGENS NTEAQSISKA  180
NSTKFDGTGS AEGNKRSAIG DIAPAARHFR SLSVDSAFGS LHFNEVSPKL PSAAGIHVSQ  240
LSPSNLASEN SAKFSLDFGN AEFSEAEVKK IMTDERLAEI ALSDPKRAKR VLANRQSAAR  300
SKERKLRYIS ELEHKVLTLQ TEATTLSAQL TVLQKDFSEL TNQNNELKFR LQAMEQQARL  360
RDALHEALTA EVQRLKLAAA ELGEDDGSST SMIQQLPMKH HVLQLQHHQS SQIQQLSVAT  420
SKTATTTSAT PTSA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027090093.1	0.0	transcription factor RF2a-like isoform X1
TrEMBL	A0A068UGL3	0.0	A0A068UGL3_COFCA; Uncharacterized protein
STRING	XP_009803494.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1265	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	2e-91	bZIP family protein