PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g00180
Common NameGSCOC_T00024459001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 289aa    MW: 31865.2 Da    PI: 8.6664
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g00180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.37.7e-09105146445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                  +k+ +r  +NR AA rsR+RKk++i+ Le k+   eae ++L
  Cc10_g00180 105 SKKRKRQLSNRDAAVRSRERKKMYIKDLEIKSRYYEAECRRL 146
                  6999***************************99998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-6101166IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.749104146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-10105164No hitNo description
SuperFamilySSF579598.13E-10106161No hitNo description
PfamPF077161.9E-7106146IPR004827Basic-leucine zipper domain
CDDcd147041.94E-12107158No hitNo description
PROSITE patternPS000360109124IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYPEEEGEED RLTASLGFLS DIILDSPLPS DPSSPDNPSP ESDFPYSNHN SNSDSDAKDV  60
QQPPNLIGHQ ELLTPAAIPH PHQEEKGRSE AGQLNNNGDD VDPISKKRKR QLSNRDAAVR  120
SRERKKMYIK DLEIKSRYYE AECRRLGMLL QCYLAENHAL RLSLNTTTTT QAFDASTTKQ  180
ESAVLILESL LLGSLLWFLG IVALLTLPRQ LPNLGAAGAK KVGCKTPRSL APREAGTKVH  240
GTLGFQSFMM SKRCRGSRRK MRCSFKLGSA ASFRGILSVT PCQFLAFC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149364.11e-172bZIP transcription factor 60
TrEMBLA0A068UI160.0A0A068UI16_COFCA; Uncharacterized protein
STRINGevm.TU.contig_24967.63e-46(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71012128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.16e-14basic region/leucine zipper motif 60