PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g00120
Common NameGSCOC_T00024448001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 1066aa    MW: 117882 Da    PI: 7.0974
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g00120genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40132209178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqv++Ce+dls+ak+yhrrhkvCe+hska+++lvs+++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+
  Cc10_g00120 132 MCQVDHCEEDLSHAKDYHRRHKVCEFHSKATKALVSKQMQRFCQQCSRFHPLPEFDEGKRSCRRRLAGHNRRRRKTQP 209
                  6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-33127194IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.693130207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-37131210IPR004333Transcription factor, SBP-box
PfamPF031105.6E-29133206IPR004333Transcription factor, SBP-box
CDDcd002043.28E-5818956No hitNo description
Gene3DG3DSA:1.25.40.202.7E-4857963IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.97E-6857961IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1066 aa     Download sequence    Send to blast
MEEIGTQVAS PIFIRQASFA VGAGGGGSAR FCSQHPAPRK RSLPFTQQQQ HQQEPSDAWT  60
SKQWEWDSMR FIAKPHECSD HLRLKLGSDS GSGGKAGDAA GTSTSFNSTD EPVSRPNKRV  120
RSGSPGSATY PMCQVDHCEE DLSHAKDYHR RHKVCEFHSK ATKALVSKQM QRFCQQCSRF  180
HPLPEFDEGK RSCRRRLAGH NRRRRKTQPE DAASRVLLPG SSEKGINSDL DIVNLLAVLA  240
RAQESLILLF VDVPGNTEDR GSTLPDKDQL LQILAKINAL PLPANLAAKL PLFSNLGRSV  300
PNQVPSQNQS HLDENSSPST MDLLTLLSGT PPVCAPNKME SEPERSSQGS DSEKTNSACS  360
DQAACLNLNS GPAMEFPCIG GERSCSSTQS PVDDSDCCVE EIHPHLPLQL FSSSPEDNCP  420
PKLPASRKYF SSDSSNPSEE RSPSYSPTVV QKLFPVKRGT LKQGNTSSDG DGDANSRAIR  480
DAGCNTLLQL FAGSSVGNDV GSIQSFPFQA GYTSSSGSDH SPSSMNSDTQ DRTGRIIFKL  540
FDKDPSHLPG TLRTQIHNWL LNSPSEMESY IRPGCVVLTV YVSMSLFSWE QFEDKLLHHV  600
KSLIRDFNTD FWGSGRFLLY TGKQLASHVD GKLRIYKTKR AWRSPELLSV SPLAVVHGQE  660
TSLLLRGRNL NVSGIKFHCS HTGDYTVEDV SGPACQEPEY NEINLCNFKV STTASVLGRC  720
FIEIENGFRI TSFPVIIADK PICQELRLLE YDFSEGAKME DSMSAYYQHG PGRPGSREEV  780
LHFLNELGWL FQRKCNSSLL EGPDYKISRF KFLFIFSVEH DFCSLVKSLL DILLEINLGK  840
EGLNRVSLEM LSEIHLLNRA VKRRCKNMID LLLNYSIDDS SDTSKHYIFT PNHVGPGGVT  900
PLHLAACAFR SDDLVDALTS DPQEIGLHCW KSLLDANGLS PYAYAAMRNN HSYNRLVAQK  960
LADKETGQVS VSVGNEIEQL WLEVNQDHGP SFHIKRSQKP CSKCAAVAMR YRRIPGSQGL  1020
LHRPYIHSML AIAAVCVCVC LFLRGAPDIG LVEPFMWENL CYGPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31123206184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1858863RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148207.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A068UG600.0A0A068UG60_COFCA; Uncharacterized protein
STRINGVIT_18s0122g00380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128871219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]