PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g10750

Common Name

GSCOC_T00041006001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 824aa MW: 91132 Da PI: 7.211

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g10750	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.8e-29	504	554	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Cc09_g10750 504 EKSISLQDLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 554 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	493	574	IPR003035	RWP-RK domain
Pfam	PF02042	4.9E-26	507	554	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.09E-22	716	810	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-22	723	808	No hit	No description
PROSITE profile	PS51745	24.11	726	809	IPR000270	PB1 domain
SMART	SM00666	9.6E-25	726	809	IPR000270	PB1 domain
Pfam	PF00564	6.0E-18	727	808	IPR000270	PB1 domain
CDD	cd06407	1.17E-38	727	808	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence Send to blast
MNRRLWVGPT GDPTPNTSVR KRLVQAIEYL RKSTSDKDAL IQIWVPVTRG GGRVLSTKNQ 60 PFSLDPNCRS LAEYRHVSRN YQFAAEEDSK ELVGLPGRVF LKKLPEWTPD VRFFKGEEYP 120 RVNHAQQYNV RGCLALPVFQ RGSGTCLGVV EIVSTAQKVN YGPELENICK ALEAVDLSSS 180 IISTSPNMKD CDESYQLALV DIRSVLKYVC DMNKLPLAQT WASCIRQGKG GCRHSEENYV 240 RCVSTVDSAC YVRDPQVMDF HAACSEHHLL KAEGLPGGAF MTDQPCFATD ITAFSKTDYP 300 LSHHAKIFGM RAAVAIRVQS IYTKSADFVL EFFLPLDCTD AEDQKQMLNS IFSALQQICH 360 CLHVITDQKV REETTIPDDE KPSSSVSKLV KEKTLGFVSP AKELSLSTSS WVAPALDNSG 420 TVKDVAFSLD NHQEDPEEEC KLTTQWDNNK AELHHTPTSP KLIQIQQRSG LKGHVVGSED 480 VSAVGGHNSM GDRSTGQRRR TKTEKSISLQ DLRQYFSGSL KDAAKSIGVC PTTLKRICRQ 540 HGITRWPSRK IKKVGHSLRK LQLVIDSVQC AEGAIQLSSF YTNFPELNSA NLPTPSNLSM 600 SQGSDHLQKL TTQPEGCILS PETTASKSPS SSGSHSSSSS FCYSTGPMQS IPVHAPSAQD 660 ASSAEECRAA LKKTCSDAEL HDLVKKEETK LLGRSQSQKI FIDDVSPDTL PSLPQTSSQI 720 LQSGSLFRVK VNFGEEKVRF SLQPHWVFAD LLKEVRGRFS IDDLIEIDLK YLDDDNEWVL 780 LTCDADLEEC IDIHRSSKST VIRLSIHQGR HFNVGSTSGS HGS*

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence Send to blast

MNRRLWVGPT GDPTPNTSVR KRLVQAIEYL RKSTSDKDAL IQIWVPVTRG GGRVLSTKNQ  60
PFSLDPNCRS LAEYRHVSRN YQFAAEEDSK ELVGLPGRVF LKKLPEWTPD VRFFKGEEYP  120
RVNHAQQYNV RGCLALPVFQ RGSGTCLGVV EIVSTAQKVN YGPELENICK ALEAVDLSSS  180
IISTSPNMKD CDESYQLALV DIRSVLKYVC DMNKLPLAQT WASCIRQGKG GCRHSEENYV  240
RCVSTVDSAC YVRDPQVMDF HAACSEHHLL KAEGLPGGAF MTDQPCFATD ITAFSKTDYP  300
LSHHAKIFGM RAAVAIRVQS IYTKSADFVL EFFLPLDCTD AEDQKQMLNS IFSALQQICH  360
CLHVITDQKV REETTIPDDE KPSSSVSKLV KEKTLGFVSP AKELSLSTSS WVAPALDNSG  420
TVKDVAFSLD NHQEDPEEEC KLTTQWDNNK AELHHTPTSP KLIQIQQRSG LKGHVVGSED  480
VSAVGGHNSM GDRSTGQRRR TKTEKSISLQ DLRQYFSGSL KDAAKSIGVC PTTLKRICRQ  540
HGITRWPSRK IKKVGHSLRK LQLVIDSVQC AEGAIQLSSF YTNFPELNSA NLPTPSNLSM  600
SQGSDHLQKL TTQPEGCILS PETTASKSPS SSGSHSSSSS FCYSTGPMQS IPVHAPSAQD  660
ASSAEECRAA LKKTCSDAEL HDLVKKEETK LLGRSQSQKI FIDDVSPDTL PSLPQTSSQI  720
LQSGSLFRVK VNFGEEKVRF SLQPHWVFAD LLKEVRGRFS IDDLIEIDLK YLDDDNEWVL  780
LTCDADLEEC IDIHRSSKST VIRLSIHQGR HFNVGSTSGS HGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087419.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A068V3N5	0.0	A0A068V3N5_COFCA; Uncharacterized protein
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein