PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g08740
Common NameGSCOC_T00020853001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 907aa    MW: 100062 Da    PI: 6.9054
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g08740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.7e-24128229199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Cc09_g08740 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 221
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Cc09_g08740 222 LLLGIRRA 229
                  9****997 PP
2Auxin_resp119.62.4e-39254337183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS Wrs+k
  Cc09_g08740 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSYWRSVK 337
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.32E-49112257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-42120243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-21127228No hitNo description
PfamPF023623.6E-22128229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548128230IPR003340B3 DNA binding domain
PfamPF065072.5E-34254337IPR010525Auxin response factor
PfamPF023096.9E-6769862IPR033389AUX/IAA domain
SuperFamilySSF542773.6E-6771848No hitNo description
PROSITE profilePS5174522.463773857IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MRLSPAGFTQ QPPEGERRCL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA SYLPADLGSP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SYWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPL GLPSFNGMKD DEMGINSPLM WFRGDVGERA LHCLNYQGIG  420
VAPWMQPRVD APILGMQTDL YQAMAAAALQ EMRAVGPSKQ ALSSLLQFHQ TQGIANRPTS  480
LVQPQTLQQS QPEPTFLQGL PGSQSPAQSQ TQAPSLLIQQ QLHHQNSFSN LQQRQQQQQP  540
LPQQQQQVND HQQVSSVATV LPQLTSSSQV QSHSIQAISP MHQQSFSDSN GNSVTSSILS  600
PLQSLLGSVP QDEASHLLSV PRSSSLLSPS GWPPKRVAID PILPLGVSQC ISPLMEEMGP  660
PNNSISQNSV SLPPFPGREC SIDQEGTNDP QNSLLFGVNI DSSSLLIQNG MSNLRGVVSD  720
GGCTTIPFPS SNYAGTTGTK FQQNPEMTPS SCIQESGFLR SPDNIGQGNP ATRTFVKVYK  780
SGSFGRSLDI SKFSSYHELR IELARLFGLE GLLEDPLRSG WQLVFVDREN DVLLLGDDPW  840
PEFVNSVWCI KILSPQEVQH MGKRGLELLN SAPNSRLPNG SCDDYASLQE PRNAITRMTS  900
VGSLNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611535845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087006.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A068UB170.0A0A068UB17_COFCA; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]