PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g08400
Common NameGSCOC_T00020799001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 354aa    MW: 39777.3 Da    PI: 6.9245
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g08400genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.73.9e-3169122255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtp+LH rF++ave+LGG+e+AtPk++l+lm+ kgL ++hvkSHLQ+YR+
  Cc09_g08400  69 PRLRWTPDLHLRFLHAVERLGGQERATPKSVLQLMNTKGLNITHVKSHLQMYRS 122
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2965123IPR009057Homeodomain-like
PROSITE profilePS5129412.60465125IPR017930Myb domain
SuperFamilySSF466897.35E-1567123IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2369124IPR006447Myb domain, plants
PfamPF002498.1E-970121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEGSGDAECS KTCPSSGETE ADEDENEHEG KIDDDHKQKD GGTSSNSSTV EENEINKPPV  60
RPYVRSKMPR LRWTPDLHLR FLHAVERLGG QERATPKSVL QLMNTKGLNI THVKSHLQMY  120
RSKKIDDPSQ GITDHRQVFE GVDPNIFNLS QIPMFPGFHH NHKSTFRYGE ATWDRLATLM  180
QISTMRQNMI NKIRPGFYDI WTGRNIGSRS SEVYSRILNS NQLSSWHTDE LQSTMQSFHD  240
QQEYQQDRLK SSKQVQSKTV YFSSGRSKIL GVEEGMILEK QAGVKRKASN CNVHLNLSLG  300
LGPVRDGYHE GLEDDDGHLS LSLCSPSSSK IRRLIDVSST ENACGASTLD LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027086367.10.0transcription repressor KAN1-like
TrEMBLA0A068UBK20.0A0A068UBK2_COFCA; Uncharacterized protein
STRINGEOY071178e-85(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43822141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-56G2-like family protein