PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g08040
Common NameGSCOC_T00003802001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 850aa    MW: 93047.2 Da    PI: 6.2157
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g08040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182381357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cc09_g08040 23 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                 6789*****************************************************97 PP
2START172.62.6e-541703772204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++++
  Cc09_g08040 170 VAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELIYMQ 266
                  68999*****************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   s  +vRae+lpSg+li+p+++g+s v++v+h+dl+ ++++++lr+l++s+ + 
  Cc09_g08040 267 TYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTCFVRAEMLPSGCLIRPCEGGGSIVHIVDHIDLDVWSVPEVLRPLYESSKIL 364
                  *************************************99999888999************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k+++a+l++ +
  Cc09_g08040 365 AQKMTMAALRHIR 377
                  *********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-191181IPR009057Homeodomain-like
PROSITE profilePS5007115.7911882IPR001356Homeobox domain
SMARTSM003891.6E-152086IPR001356Homeobox domain
PfamPF000463.6E-162381IPR001356Homeobox domain
CDDcd000861.15E-162383No hitNo description
SuperFamilySSF466893.98E-162385IPR009057Homeodomain-like
CDDcd146861.80E-675114No hitNo description
PROSITE profilePS5084824.701160388IPR002913START domain
CDDcd088755.06E-72164380No hitNo description
SMARTSM002347.0E-51169379IPR002913START domain
Gene3DG3DSA:3.30.530.209.3E-23170374IPR023393START-like domain
PfamPF018521.5E-51170377IPR002913START domain
SuperFamilySSF559616.04E-38170381No hitNo description
PfamPF086702.5E-47704848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MALSIHRDSI SGGSKQQQMD NSKYVRYTPE QVEALERVYA ECPKPSSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLTAMNK LLMEENDRLQ KQVSQLVYEN  120
GYMRTQIQTV STATTDTSCE SVVMTGQQQQ QNPTQHPQRD ANNPAGLLAV AEETLAEFLG  180
KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWF  240
RDCRCLDVLS VIPTGNGGTI ELIYMQTYAP TTLASARDFW TLRYTTSLED GSLVICERSL  300
TSSTGGPTGP PSTCFVRAEM LPSGCLIRPC EGGGSIVHIV DHIDLDVWSV PEVLRPLYES  360
SKILAQKMTM AALRHIRQIA QETSGEVHYS GGRQPAVLRA LSQRLCRGFN DAVNGFVDDG  420
WSIMGSDGAE DVTITINSSP SKILGSQYST LSMLPSFGGV MCAKASMLLQ NVPPALLVRF  480
LREHRSEWAD YGVDAYAAAS LKASPYAIPC ARPGSFPSSQ VILPLAQTVE HEEFLEVVRL  540
EGHAFSPEDI ALSRDMYLLQ LCSGVDENAA SSCAQLVFAP IDESFGDDAP LLPSGFRVIP  600
LDAKSDGPGA TRTLDLASAL EVGTGGARST AEADPKNYNL RSVLTIAFQF TFENHYRENV  660
AAMARQYIRS IVGSVQRVAM AIAPSRLSSQ MVPKSLPGSP EAVTLARWIW RSYRLQTGGE  720
LLQVDSNSGD AILKQLWHHS DAIMCCSVKA NASAVFTFAN QAGLDMLETT LVALQDIMLD  780
KILDEAGRKV LLSEFSKIMQ QGFAYLPAGV CSSSMGRPIS YEQAVAWKVL NDDDSNHCLA  840
FMFMNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087880.10.0homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_027184702.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A068V9X70.0A0A068V9X7_COFCA; Uncharacterized protein
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]