PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g04020
Common NameGSCOC_T00017475001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 725aa    MW: 79331.6 Da    PI: 6.6455
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g04020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.4e-15423474155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cc09_g04020 423 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 474
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-14271390No hitNo description
PROSITE profilePS5103215.659272388IPR001471AP2/ERF domain
SMARTSM003801.6E-19272394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-13272294IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-9351390IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-13352389IPR001471AP2/ERF domain
PfamPF008471.0E-9423474IPR001471AP2/ERF domain
CDDcd000181.72E-25423484No hitNo description
SuperFamilySSF541711.5E-17423484IPR016177DNA-binding domain
PROSITE profilePS5103219.177424482IPR001471AP2/ERF domain
SMARTSM003801.4E-33424488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18424482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MASMNNWLGF SLSPQEIRSQ PHQDHSQNTV PRLDTFSSEE LSGTDVSGDC FDLSSHASTI  60
PSLNLPAPFG ILEAFNRNNQ SQDWSFKELN VNPNTSYKTA GSEMSMLMGR SCNNNNHNLE  120
NQEPKLENFL GVGGQNSLHL PSQTVEASSS NGNGTIGLSM IKNWLRNNPS TSQPENKIIN  180
GNDGAVGCSN NAQNLSLSMS TGSQSTSALP LLTAASCSDG EGGGGESSTS DNTNTNKQQN  240
GGIGITSLDG QSGAIEAVPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT  300
RKGRQGMVIY CLPLLVTISL LFIFLLNLSL LVLTIFFFVS HFAYVLMGGG YNCFAVYLGG  360
YDKEEKAARA YDLAALKYWG TTTTTNFPIS NYEKEIEEMK HMTRQEYVAS LRRKSSGFSR  420
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  480
FEISRYDVKS ILESSTLPIG GAAKRLKDAE QAEMALDAHR TNNDNLSSHL TDGMSSYGAQ  540
HAWPTIAFQQ AQPLTMHYPY GQQQRLWCKQ ENDSDVSHSF HDLHQLQLGN THNFLQPSVL  600
HNLMSLDSSS MEHSSSCNSV IYSNGSNDNA TYQGVGYGSS SSYLLPMSTA VIAEEGSQNQ  660
GNGFGENGVK AIGYENMFGS SDPYQTRNFY YHPLPSSNGT LRAARTNNMA VCHGSSTFTV  720
GNDT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8686770.0LN868677.1 Coffea canephora mRNA for transcription factor tipo AP2/ERF (BBM gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183775.10.0AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A068U6P30.0A0A068U6P3_COFCA; Uncharacterized protein
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-120AP2 family protein