PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g03640
Common NameGSCOC_T00017521001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 486aa    MW: 54143.9 Da    PI: 6.6563
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g03640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-3158115260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +Dgy+WrKYGqK+vkgse+prsYY+C  ++Cpvkkkvers+ d++++ei+Y+g Hnh+k
  Cc09_g03640  58 EDGYSWRKYGQKHVKGSEYPRSYYKCNNSNCPVKKKVERSH-DGEITEIIYKGAHNHPK 115
                  8****************************************.***************85 PP
2WRKY106.61.2e-33218276159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+++d k v +tYeg+Hnhe
  Cc09_g03640 218 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASDDIKSVLTTYEGKHNHE 276
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2854116IPR003657WRKY domain
SMARTSM007746.4E-3557115IPR003657WRKY domain
SuperFamilySSF1182901.44E-2457116IPR003657WRKY domain
PROSITE profilePS5081123.8758116IPR003657WRKY domain
PfamPF031063.3E-2558114IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-36203278IPR003657WRKY domain
SuperFamilySSF1182901.26E-28211278IPR003657WRKY domain
PROSITE profilePS5081138.01213278IPR003657WRKY domain
SMARTSM007741.8E-38218277IPR003657WRKY domain
PfamPF031067.7E-26219276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MPQKANHVNS QTPNISVVNN QLPHLREGIK SETGIQELHR EDQKGTYPGA AEMSRNAEDG  60
YSWRKYGQKH VKGSEYPRSY YKCNNSNCPV KKKVERSHDG EITEIIYKGA HNHPKPHPRI  120
SLGPPSQSSE MLETSEGSEP GLKAENRTEI ALTAAYQDGE DDDRATQGST SQGDEADADE  180
SEPKRRQKEV FSTEAYLPSR STREPRVIVQ IESEIDVLDD GYRWRKYGQK VVKGNPNPRS  240
YYKCTSAGCP VRKHVERASD DIKSVLTTYE GKHNHEVPTN KTSGLPSASN SPPDVSDPNS  300
SLIVPRNPSI SNRELQVQDL PLHYEMKPAL GNHDFLRSNL LGDFVTDHMQ IGASSIYQMK  360
FPPTPLQNPL SYSTFLMNSS GSDSRVSCQK FPPVVPDFPM SIPINVPRSS PNMALNNAFH  420
SFNHNQTIPS ATAVQCQHIT EGDLRFLRPK EEKEDNLYET CLATPDNSNV TSSTEFCRSN  480
GNFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3458278877Probable WRKY transcription factor 4
2lex_A5e-3458278877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087611.10.0WRKY transcription factor SUSIBA2-like
TrEMBLA0A068U7U30.0A0A068U7U3_COFCA; Uncharacterized protein
STRINGXP_008218446.11e-131(Prunus mume)
STRINGXP_008389044.11e-131(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-81WRKY DNA-binding protein 34