PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g03140 | ||||||||
Common Name | GSCOC_T00017585001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25179.1 Da PI: 5.7417 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + +r++lg+f t +eAa+a++ a+k+l+g Cc09_g03140 55 TYRGVRQRT-WGKWVAEIREP-----NhgARVWLGTFNTSYEAARAYDDAAKRLYG 104 69****999.**********9.....336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.66E-30 | 54 | 113 | No hit | No description |
Pfam | PF00847 | 8.2E-14 | 55 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 55 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-34 | 55 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 55 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 55 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-10 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MMERVENEGV NVGIPVDKKP KKEAAISTSM KKITVGGSRK GCMRGKGGPE NAFCTYRGVR 60 QRTWGKWVAE IREPNHGARV WLGTFNTSYE AARAYDDAAK RLYGKCAKLN LPEEDQPPSP 120 PGSSSVASAA YSNNTGYKNG QDLTNEHQSP ELEDKKNGTS VLDEVSIFKD INGEFAFDET 180 PAPSLLGEEQ ILNWPEYPFD NGFHWSNDGG ISVGGLIDHA VVYKLLGPPN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 56 | 114 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ687375 | 0.0 | JQ687375.1 Coffea arabica strain Laurina DREB2 (dreb2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087726.1 | 1e-172 | dehydration-responsive element-binding protein 2D-like | ||||
Refseq | XP_027089426.1 | 1e-172 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A068U7X3 | 1e-170 | A0A068U7X3_COFCA; Uncharacterized protein | ||||
STRING | XP_009630729.1 | 2e-45 | (Nicotiana tomentosiformis) | ||||
STRING | Migut.F01818.1.p | 1e-45 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 5e-42 | ERF family protein |