PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g02760 | ||||||||
Common Name | GSCOC_T00017632001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21594.4 Da PI: 5.0075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.5 | 3.4e-41 | 24 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk lrr+C+++Cvlapyfp+++p +f++vhk++Gasn+++ l++lpe++r+dam+s+vyeA ar+ dPvyG++g+++ lqqq+ l++ela+++ Cc09_g02760 24 PCAACKSLRRRCSDNCVLAPYFPSSEPLRFNIVHKVYGASNIIRRLQELPEHQRSDAMNSMVYEAAARITDPVYGCAGTVTLLQQQILGLQEELAKAQ 121 7**********************************************************************************************998 PP DUF260 99 ee 100 e Cc09_g02760 122 GE 123 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.359 | 23 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-39 | 24 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEHCRQQNTP PSPDQNATPR TQYPCAACKS LRRRCSDNCV LAPYFPSSEP LRFNIVHKVY 60 GASNIIRRLQ ELPEHQRSDA MNSMVYEAAA RITDPVYGCA GTVTLLQQQI LGLQEELAKA 120 QGEILNMQCQ IANLVSLNWM EMFPSQEQET INVSGLQQDI IHVSEKQPWD DSDTTNFSLE 180 QLCIHEKAMG I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 18 | 129 | 5 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 18 | 129 | 5 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087601.1 | 1e-120 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 7e-53 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A068U7N9 | 1e-141 | A0A068U7N9_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0008s04350.1 | 2e-56 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-50 | LOB domain-containing protein 1 |