PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g02450
Common NameGSCOC_T00017674001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 551aa    MW: 60405.2 Da    PI: 7.2108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g02450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-17248297155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cc09_g02450 248 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 297
                  78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15248306IPR016177DNA-binding domain
PfamPF008478.6E-9248297IPR001471AP2/ERF domain
PROSITE profilePS5103217.49249305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-17249305IPR001471AP2/ERF domain
CDDcd000183.10E-23249307No hitNo description
SMARTSM003802.6E-31249311IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-6340385IPR016177DNA-binding domain
CDDcd000184.89E-13340385No hitNo description
SMARTSM003809.2E-13341389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSEYMVKGLP SSIPSSSSPL LNASLPTAKM LSTMYARLGI KRREEEEEKM LLDLNIDADA  60
AAAASVDSAC DETDPFPCPV KTTAASTATL LTDHDSGASS SVLIIADEES NSSSPPTHNQ  120
PHHRCTTTTL NFSILNATGE DHIIQILDND QDFDNDDHRQ GLMTRQFFPV VPNNDPFPFP  180
TTTTTTTARP PQWLKLSVPE AAAAGEIGGI YNKGQQQQQH QLGQPYQQHQ VAGGGAKKSR  240
RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHTAARAYDR AAIKFRGVDA  300
DINFHISDYA DDLKQMQNLT KEEFVHILRR HSTGFSRGSS KYRGVTLHKC GRWEARMGQF  360
LGKKAYDKAA IKCNGREAVT NFEHSAYEGE ISGAAKDGAR GDNLDLNLWI SPASDGQKEI  420
GDSKSSCGHY AASDDKMIKV ENSFNTPEYL PMASQDSSVW THTYSGFGPK NEERARKMRP  480
EGIPIPGLSN WPWKMHCHGV ITSVPLFPSA ASSGFSTVTA TSTTLVSTNA PNKIVHTSAF  540
QHPPLTLNYN *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027086812.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ8H4432e-88AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A068U9N80.0A0A068U9N8_COFCA; Uncharacterized protein
STRINGXP_009772737.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-81related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]