PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g01430 | ||||||||
Common Name | GSCOC_T00017812001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WRKY | ||||||||
Protein Properties | Length: 555aa MW: 59861.9 Da PI: 6.9475 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 1.9e-30 | 291 | 349 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ Cc09_g01430 291 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTVLITTYEGTHNHP 349 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-33 | 275 | 351 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 283 | 351 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.425 | 285 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-36 | 290 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 292 | 349 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MDKGWGVTVD NPDKIGFFGN KPVFGFNLSP RLNPSKDSHA AASSDGEKRV VVGEVDFFSD 60 KKKANDILIK KEDCHGEDKM KTNMDVVNTG LQLVIANTGS DQSTVDDGVS SDIEDKRAKL 120 ELAQLQVELE RMNAENRRLR EMLSQVSNNY TALQMHLMTL MHQQQQNAKP QTTQDHEIGE 180 RKSEENKPEN GGVVVPRQFL DLGPSGTAEM DEPTNSSSEE RTLSGSPRNN MELSRNKGVG 240 REESPESQGW APNKVAKLNA PSKTVDHAQA EATMRKARVS VRARSEAPMI TDGCQWRKYG 300 QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTVLIT TYEGTHNHPL PPAAMAMAST 360 TSAAANMLLS GSMSSADGLM NPNFLARTIL PCSSNMATIS ASAPFPTVTL DLTQTPNPLQ 420 FQRQPSTPFQ LPFGTPPQNF PPVANPQMHQ VFGQALYNQS KFSGLQVSQD IEAAAAAAAQ 480 MQNQGQHPQV QQGQHQPSFA DTLSAATAAI TADPNFTAAL AAAISSIIGG SHPSSSNNSN 540 PTTSTPPTAN FPGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 277 | 353 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ335599 | 0.0 | DQ335599.1 Coffea arabica putative WRKY1a transcription factor (WRKY1a) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027184369.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-157 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A068U7A5 | 0.0 | A0A068U7A5_COFCA; Uncharacterized protein | ||||
STRING | XP_009776375.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-128 | WRKY family protein |