PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g00640
Common NameGSCOC_T00017919001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 545aa    MW: 60566.4 Da    PI: 5.8213
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g00640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.82.9e-1291745441374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cAeavs+ + + aq l+++l++++s +gdp+qRl ay++e+L+arl++s+s +yk+l+++e +     e +++++++++++P++kf+++ a
  Cc09_g00640 174 LKQLLLACAEAVSNAEISTAQGLMNELEQRVSISGDPIQRLSAYMMEGLRARLLSSGSIIYKKLKCKEPT---GPELMSYMHFLYQICPYFKFAYMSA 268
                  689******************************************************************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N  I ea+e+e+r+H+iDf + qG QW++++qaLa Rp+gpp +R+Tgv++++s+  +   l  +g+rLa++A+++gvpfef+  +a +  ++ele+L
  Cc09_g00640 269 NVVIGEAMEHENRIHVIDFCLAQGSQWVSFIQALAHRPGGPPYIRVTGVDDSQSVhaRGGGLDVVGQRLANVAASCGVPFEFHG-AAISGCEVELENL 365
                  ***************************************************9998889999***********************.888999******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v++gEalaVn+ ++lh+++desv++ ++rd++L+l+kslsPkvv++veqe+++n+++F  rf+e+leyy+a+f+s++a+ pr++++ri+ E+++++r
  Cc09_g00640 366 KVRHGEALAVNFPYMLHHMPDESVNTMNHRDRLLRLIKSLSPKVVTLVEQESNTNTAPFYPRFCETLEYYTAMFESIDATRPRNDKQRISAEEHCIAR 463
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ivn+vacega+r+erhe ++kWr rl++aGF p pls ++ + ++ +l++++ + yr+ +++g+l+lgWk+r+L ++SaWr
  Cc09_g00640 464 DIVNIVACEGADRVERHELFGKWRLRLTMAGFVPCPLSFSVGNAIRDMLKEYSPN-YRLVDRDGALYLGWKNRALATCSAWR 544
                  *****************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.279148525IPR005202Transcription factor GRAS
PfamPF035141.0E-126174544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQASQASQTS EAIHMLYHQP FQQIESYNLS PFQVLNSNVC ADNSSQGAQV SFQACNEQFA  60
TLESLPMTDY VNSDSPSTVS ISSNRSPFSP QCSQSYMSDV HHSSDNTYGS PLSGSSGVDD  120
SNELRNVLRE LEIKLMEESE IDDSSSCSVN NVVGQPVFST RGNRVVQMAH TMDLKQLLLA  180
CAEAVSNAEI STAQGLMNEL EQRVSISGDP IQRLSAYMME GLRARLLSSG SIIYKKLKCK  240
EPTGPELMSY MHFLYQICPY FKFAYMSANV VIGEAMEHEN RIHVIDFCLA QGSQWVSFIQ  300
ALAHRPGGPP YIRVTGVDDS QSVHARGGGL DVVGQRLANV AASCGVPFEF HGAAISGCEV  360
ELENLKVRHG EALAVNFPYM LHHMPDESVN TMNHRDRLLR LIKSLSPKVV TLVEQESNTN  420
TAPFYPRFCE TLEYYTAMFE SIDATRPRND KQRISAEEHC IARDIVNIVA CEGADRVERH  480
ELFGKWRLRL TMAGFVPCPL SFSVGNAIRD MLKEYSPNYR LVDRDGALYL GWKNRALATC  540
SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6018154326378Protein SCARECROW
5b3h_A2e-6018154325377Protein SCARECROW
5b3h_D2e-6018154325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087498.10.0scarecrow-like protein 13
RefseqXP_027087500.10.0scarecrow-like protein 13
RefseqXP_027087501.10.0scarecrow-like protein 13
RefseqXP_027087502.10.0scarecrow-like protein 13
RefseqXP_027087503.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A068U8I50.0A0A068U8I5_COFCA; Uncharacterized protein
STRINGSolyc11g012510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13