PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc09_g00080

Common Name

GSCOC_T00017993001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 301aa MW: 32671.3 Da PI: 8.0737

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc09_g00080	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.9e-33	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Cc09_g00080 52 KPRLRWTADLHDRFVDAVAQLGGPTKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.558	49	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-31	49	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-24	52	107	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-16	52	108	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-8	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	6.3E-14	150	195	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MLPRLIQPRE GVIIQEEHIN NSSSNRTTAG VGIGAIGVGL GDPCLVLTSD PKPRLRWTAD 60 LHDRFVDAVA QLGGPTKATP KAIMRTMGVK GLTLFHLKSH LQKYRLGKQS GKDLVEASKD 120 GLAAAYLLES PHANKSPQSL PDSDMNEGYE VKEALRVQME VQSKLHLQVE AEKHLLIRQD 180 AEQRYMAMLE RACKMLAEQI VGCTIRGPDR EDYQGLGTKT QIGASHNAYG LQPSESAEVR 240 RIHSPEEVIR QIKQCADCST ESCLTSRDNP AGLCPGGSPS PGGKKRFLSM DSASASFIYG 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027086326.1	0.0	protein PHR1-LIKE 3-like isoform X1
Refseq	XP_027185318.1	0.0	protein PHR1-LIKE 3-like isoform X1
TrEMBL	A0A068U7M8	0.0	A0A068U7M8_COFCA; Uncharacterized protein
STRING	Solyc04g015290.2.1	1e-130	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	4e-66	G2-like family protein