PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g16560

Common Name

GSCOC_T00035620001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 301aa MW: 32357.7 Da PI: 8.0538

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g16560	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	43	104	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Cc08_g16560 43 KEQALNCPRCNSINTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 104 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	36	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-34	45	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.022	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDTAQWPQEI VVKSMEEIVV PNGSTTSCSK PGSSLERKVR PQKEQALNCP RCNSINTKFC 60 YYNNYSLSQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSSSSS SSVSSSKKLP 120 DLIPPSSHQN PKIHEGQDLN LGFSSSHDFK TITELIQVPN FDSNNKENLT SSSSNSTTTS 180 CHLSALELLT GITPIRGLSS FVPMPITTDP TVVYSSSGGF QLPEFKPSLS FSLDGLGSSG 240 GYGNLHGVQE SSGGRPLFPF EDLKQVSGTT STDVDQQNRD QHADSTGYWT GVLGGGGGSW 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027079853.1	0.0	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q8LAP8	1e-63	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A068UV02	0.0	A0A068UV02_COFCA; Uncharacterized protein
STRING	cassava4.1_012842m	1e-120	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	9e-52	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]