PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g16530
Common NameGSCOC_T00035616001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 273aa    MW: 30797.6 Da    PI: 8.5621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g16530genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed+ll d+v+  G g+W++ +++ g+ R++k+c++rw +yl
      Cc08_g16530 14 RGPWSPKEDKLLTDYVQANGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding47.44.5e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++l++++  +lG++ W++Ia++++ gRt++++k++w++
      Cc08_g16530  67 RGNVTEAEEDLIIRLQSLLGNR-WSLIAARLP-GRTDNEIKNHWNT 110
                      7888******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.431961IPR017930Myb domain
SuperFamilySSF466892.81E-2811108IPR009057Homeodomain-like
SMARTSM007171.5E-111363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-221568IPR009057Homeodomain-like
CDDcd001671.49E-81661No hitNo description
PROSITE profilePS5129423.8962116IPR017930Myb domain
SMARTSM007173.3E-1466114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2269116IPR009057Homeodomain-like
PfamPF002493.0E-1369110IPR001005SANT/Myb domain
CDDcd001671.20E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRAPCCSKV GLQRGPWSPK EDKLLTDYVQ ANGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNV TEAEEDLIIR LQSLLGNRWS LIAARLPGRT DNEIKNHWNT RLLKRLHKGG  120
IQPQKSSTSL LSKKSSKQPT KKKSNNKLPD HFHNTTATMY RPKPIKICSE SAKSNSFGSV  180
ASGSTNKSSS NQEEGEEVVD KLEEEAKTSQ VSDISWSSFE LDDQSYEPRF EISDENQILF  240
YDDDDCDLSL QADPVSDSNL LDKVYDEYLR LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121165108B-MYB
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081673.11e-177transcription factor MYB8-like isoform X1
RefseqXP_027181318.11e-177transcription factor MYB8-like isoform X1
RefseqXP_027181319.11e-177transcription factor MYB8-like isoform X1
TrEMBLA0A068UX810.0A0A068UX81_COFCA; Uncharacterized protein
STRINGXP_009607630.13e-83(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.17e-61myb domain protein 111