PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g16330 | ||||||||
Common Name | GSCOC_T00035590001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 76525.1 Da PI: 6.5474 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.5e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++el+ Cc08_g16330 128 FCKVLTASDTSTHGGFSVLRKHANEClppldMTQPVPTQELVAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGASGELR 223 99****************************9555556669************************************************..3489999* PP EEEE- CS B3 94 vkvfr 98 v+v+r Cc08_g16330 224 VGVRR 228 **997 PP | |||||||
2 | Auxin_resp | 101.5 | 1.1e-33 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++++ + vGmRfkm+fe+eds+err+sGt+vgv+d +++W++SkWrsLk Cc08_g16330 254 ASHAVATGTLFVVYYKPRT--SQFIIGLNKYLESINNGFGVGMRFKMRFEGEDSPERRFSGTIVGVED-ISLQWKDSKWRSLK 333 789***************6..9**********************************************.667*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-40 | 118 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-40 | 120 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.40E-21 | 126 | 228 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-31 | 254 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-10 | 571 | 664 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.75E-12 | 579 | 657 | No hit | No description |
PROSITE profile | PS51745 | 22.891 | 581 | 662 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MASRGSLIQQ HQSNGSVEGQ DDLYTELWKA CAGPLVDVPK PKESVYYFPQ GHMEQLEAST 60 NQELNQRIPM FGLPPKILCN VVDIQLLAEQ ETDEVYAQIT LIPEPDHTEQ TSPDSCPSEP 120 PKPTVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMT QPVPTQELVA KDLHGTEWHF 180 KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGASG ELRVGVRRFA RQQSSMPSSV 240 ISSHSMHLGV LATASHAVAT GTLFVVYYKP RTSQFIIGLN KYLESINNGF GVGMRFKMRF 300 EGEDSPERRF SGTIVGVEDI SLQWKDSKWR SLKVQWDEPA SITRPERVSP WEIEPFVAAV 360 PTSLVPSVTG KNKRLRSHSD LLPPESASST ASAVWNPPHD SPLGNGTAEC PRSQLRSANQ 420 NHMDISCSQL QGSRNCNLRT HAEGDWLSSS QGNTSVSRFA DETESKSTIA WTTFTGCSAT 480 PAKLSNHSQS HLHDGRKPDT VASCRLFGID LISPSTGALD KELLKPANAS NVTTQDCLPN 540 TLSGCGSEHK SDLSKDSKDQ IVGQLQLPSK EVQSKQSGST RSRTKVQMQG VAVGRAVDLT 600 MLTGYNELIV ELEKMFEIKG ELSPRNKWEI IFTDDEGDMM LMGDDPWPEF CKMVRRIFIC 660 SGQDVKIMRA GSKLPLPSAD NDGTTFNWEN GED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-176 | 21 | 356 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081169.1 | 0.0 | auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A068UX67 | 0.0 | A0A068UX67_COFCA; Auxin response factor | ||||
STRING | Gorai.003G078000.1 | 0.0 | (Gossypium raimondii) | ||||
STRING | XP_009592767.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |