PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g15690
Common NameGSCOC_T00035509001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 372aa    MW: 40891.1 Da    PI: 6.2811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g15690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19154204155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Cc08_g15690 154 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 204
                  59********.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-30154212No hitNo description
SuperFamilySSF541712.03E-21155212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-30155212IPR001471AP2/ERF domain
PfamPF008472.7E-12155204IPR001471AP2/ERF domain
PROSITE profilePS5103223.736155212IPR001471AP2/ERF domain
SMARTSM003801.4E-37155218IPR001471AP2/ERF domain
PRINTSPR003674.2E-10156167IPR001471AP2/ERF domain
PRINTSPR003674.2E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MRDMLTNKKG VKYTEHRKQT TMVRPSPLPT SLACRTRKSP DMNAVKPRVV RISVTDADAT  60
DSSSDEDEEA FKRRHRVKRF INEVKIETFR DNGNGNVNAC TSAGNVNSVW RSRGSAAPAA  120
AGNGTSTTNK KRKKSSGGGG NGKQARVAEG SNVKKFRGVR QRPWGKWAAE IRDPARRVRL  180
WLGTYDTAEE AAMVYDHAAI QLRGPDALTN FATPPARSVS PPAPESATCS GYNSGEESHN  240
NQRSPKSVLR FASTSNSNEE AEAESCLPSP LHEEAVGIGK ERRDSCGEET CVSENFSHYS  300
LIPEDLRFEF EDPVVDFSDL FEDNSNIFEY ARNFDNTFVD SSENVEFGSA MPDDFFSDLG  360
DIFGKDPLVA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19154211462ATERF1
3gcc_A1e-19154211462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129133KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080675.10.0ethylene-responsive transcription factor CRF2-like
RefseqXP_027182821.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A068UV300.0A0A068UV30_COFCA; Uncharacterized protein
STRINGSolyc08g081960.1.11e-111(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-42cytokinin response factor 2