PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g14220 | ||||||||
Common Name | GSCOC_T00030253001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 383aa MW: 43664.2 Da PI: 8.2809 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 57 | 100 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd ll+++vk++ g++Wk+Ia++m gRt+ qc +rwqk+l Cc08_g14220 57 WTDEEDNLLAEVVKRFNGRNWKRIAECMT-GRTDVQCLHRWQKVL 100 ****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 66.2 | 6e-21 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+++G+++W+ Ia++++ gR +kqc++rw+++l Cc08_g14220 106 KGPWTKEEDERIIQLVEKFGSKRWSVIAKYLP-GRIGKQCRERWHNHL 152 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.3 | 1.3e-16 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l +++ +G++ W+ Iar ++ gRt++ +k++w+ Cc08_g14220 158 KDAWTEEEEAILSYYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.422 | 46 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 53 | 102 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-15 | 56 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 57 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 57 | 100 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.30E-12 | 57 | 100 | No hit | No description |
PROSITE profile | PS51294 | 32.11 | 101 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-33 | 103 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-19 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-20 | 106 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.34E-16 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-29 | 113 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 157 | 205 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.388 | 157 | 207 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.5E-14 | 158 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-21 | 160 | 206 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.08E-11 | 160 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVEFTCCPDL MKEVGFGSCS SASDSSYDSV TPRYSSDSSF TSQTTSFSTR RSSQAGWTDE 60 EDNLLAEVVK RFNGRNWKRI AECMTGRTDV QCLHRWQKVL NPELVKGPWT KEEDERIIQL 120 VEKFGSKRWS VIAKYLPGRI GKQCRERWHN HLDPAIKKDA WTEEEEAILS YYHQIYGNKW 180 AEIARFLPGR TDNAIKNHWN CSAKKKFDLN LPCCSELDSQ GSTSDGSCIT QKRTSSIEHQ 240 LLSQKVCERS GLGQERGQEN VAHVCSTELS LGNTIFHMDH LESKTHLLGT WQSSDKGVGN 300 LINSLGGFKV GGTEIVFHPY LCIIICTYLW RKNEFDSLKE FNWKNSFGLI WWTYPQLLER 360 SNKSSSSKCH TRNKAISKKL VS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-70 | 57 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-70 | 57 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083326.1 | 0.0 | transcription factor MYB3R-2-like | ||||
TrEMBL | A0A068UNB7 | 0.0 | A0A068UNB7_COFCA; Uncharacterized protein | ||||
STRING | XP_009606734.1 | 1e-119 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10393 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 4e-78 | Homeodomain-like protein |