PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g14220
Common NameGSCOC_T00030253001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 383aa    MW: 43664.2 Da    PI: 8.2809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g14220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-1857100448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      WT eEd ll+++vk++ g++Wk+Ia++m  gRt+ qc +rwqk+l
      Cc08_g14220  57 WTDEEDNLLAEVVKRFNGRNWKRIAECMT-GRTDVQCLHRWQKVL 100
                      ****************************9.************986 PP

2Myb_DNA-binding66.26e-21106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+++++v+++G+++W+ Ia++++ gR +kqc++rw+++l
      Cc08_g14220 106 KGPWTKEEDERIIQLVEKFGSKRWSVIAKYLP-GRIGKQCRERWHNHL 152
                      79******************************.*************97 PP

3Myb_DNA-binding52.31.3e-16158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+ +l  +++ +G++ W+ Iar ++ gRt++ +k++w+
      Cc08_g14220 158 KDAWTEEEEAILSYYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200
                      689*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.42246100IPR017930Myb domain
SMARTSM007172.4E-1353102IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-1556110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-2257112IPR009057Homeodomain-like
PfamPF002491.1E-1557100IPR001005SANT/Myb domain
CDDcd001677.30E-1257100No hitNo description
PROSITE profilePS5129432.11101156IPR017930Myb domain
SuperFamilySSF466898.61E-33103199IPR009057Homeodomain-like
SMARTSM007173.5E-19105154IPR001005SANT/Myb domain
PfamPF002494.1E-20106152IPR001005SANT/Myb domain
CDDcd001676.34E-16108152No hitNo description
Gene3DG3DSA:1.10.10.609.4E-29113159IPR009057Homeodomain-like
SMARTSM007172.6E-15157205IPR001005SANT/Myb domain
PROSITE profilePS5129418.388157207IPR017930Myb domain
PfamPF002498.5E-14158200IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-21160206IPR009057Homeodomain-like
CDDcd001675.08E-11160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVEFTCCPDL MKEVGFGSCS SASDSSYDSV TPRYSSDSSF TSQTTSFSTR RSSQAGWTDE  60
EDNLLAEVVK RFNGRNWKRI AECMTGRTDV QCLHRWQKVL NPELVKGPWT KEEDERIIQL  120
VEKFGSKRWS VIAKYLPGRI GKQCRERWHN HLDPAIKKDA WTEEEEAILS YYHQIYGNKW  180
AEIARFLPGR TDNAIKNHWN CSAKKKFDLN LPCCSELDSQ GSTSDGSCIT QKRTSSIEHQ  240
LLSQKVCERS GLGQERGQEN VAHVCSTELS LGNTIFHMDH LESKTHLLGT WQSSDKGVGN  300
LINSLGGFKV GGTEIVFHPY LCIIICTYLW RKNEFDSLKE FNWKNSFGLI WWTYPQLLER  360
SNKSSSSKCH TRNKAISKKL VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-70572079159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-70572079159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083326.10.0transcription factor MYB3R-2-like
TrEMBLA0A068UNB70.0A0A068UNB7_COFCA; Uncharacterized protein
STRINGXP_009606734.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.14e-78Homeodomain-like protein