PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g13970
Common NameGSCOC_T00030280001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 196aa    MW: 20894.1 Da    PI: 4.5694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g13970genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-162168355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Cc08_g13970 21 YRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAIALKG 68
                 99**6..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-172078IPR016177DNA-binding domain
SMARTSM003806.1E-262082IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-262077IPR001471AP2/ERF domain
PROSITE profilePS5103219.9282076IPR001471AP2/ERF domain
CDDcd000182.90E-162177No hitNo description
PfamPF008471.5E-92168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSTSSSGSP SRPSGGKHPM YRGIRSRSGK WVSEIREPRK TTRIWLGTYP TPEMAAAAYD  60
VAAIALKGSD IALNFPDRVS SYPAPASPSP SDIRSAAAGA AEMMKEKTAG GGDDDGKFPH  120
DQNQPGSSDH QELAFDQDRG LAGEDEFIDV EALIDMPNLL VDMAEGMLVS PPRIHSPPSS  180
DSPEHSDVDS LWSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-141681368ATERF1
3gcc_A1e-141681368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083090.11e-140ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ907e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A068UND71e-138A0A068UND7_COFCA; Uncharacterized protein
STRINGXP_010278525.13e-66(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-34ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]