PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g13960 | ||||||||
Common Name | GSCOC_T00030281001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 28804.7 Da PI: 4.9847 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 56 | 109 | 1 | 56 |
AP2 1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r+++ +++ Wv+e+r+p +k+ r++lg++ tae+Aa+a++ a+++l+g+ Cc08_g13960 56 PVYRGIRRRR-WNSnkWVCELREP---NKQSRIWLGTYPTAEMAARAYDVAALALRGH 109 68****9777.88888*******8...336**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 56 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-29 | 57 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 57 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-26 | 57 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 57 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-26 | 58 | 118 | No hit | No description |
PRINTS | PR00367 | 2.0E-7 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDASSSCSDP HPFGSLSDVS PTTAQRAINS DEEIILSSSR PKKRAGRKKF KETRHPVYRG 60 IRRRRWNSNK WVCELREPNK QSRIWLGTYP TAEMAARAYD VAALALRGHL ACLNFADSVW 120 RLPVPESRDA KDIRKAAAEA AEMFRSQEEC DNTTSEASAS GSGSESGDHH HDRVGEEIGD 180 ITHDNNEVSS FDHGEALQKN GEESTSSMFM DDEALFDVHG LMAHMAEGLL LSPPHCLGDG 240 YSFDEVENDA EVPLWSYTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 55 | 115 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 64 | RKKFKETRHPVYRGIRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027183331.1 | 1e-172 | dehydration-responsive element-binding protein 1A-like | ||||
TrEMBL | A0A068UQD5 | 0.0 | A0A068UQD5_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0012s13870.1 | 8e-81 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 7e-48 | dehydration response element B1A |