PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g13810
Common NameGSCOC_T00030300001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 302aa    MW: 33952.3 Da    PI: 6.7066
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g13810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-082502832154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp+++++++L +++gL+ +q+ +WF N+R +
  Cc08_g13810 250 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 283
                  469*****************************87 PP
2ELK22.62.5e-08204225122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK +L++++++++ ++++E++
  Cc08_g13810 204 ELKLELKQGFRSRIEDVREEIL 225
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.5E-193579IPR005540KNOX1
PfamPF037903.4E-173778IPR005540KNOX1
SMARTSM012567.3E-2493148IPR005541KNOX2
PfamPF037915.1E-1896147IPR005541KNOX2
PROSITE profilePS512139.254204224IPR005539ELK domain
PROSITE profilePS5007111.71224287IPR001356Homeobox domain
SMARTSM003895.3E-11226291IPR001356Homeobox domain
SuperFamilySSF466893.64E-16226290IPR009057Homeodomain-like
CDDcd000861.88E-11227288No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25231288IPR009057Homeodomain-like
PfamPF059201.0E-17244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQEQGLGMMA GSGSGGLGGL GDVSVAIPAG DYQNRQLKAE IATHPLYEQL LSAHVACLRV  60
ATPIDHLPLI DAQLSQSHHI LRSYASQQQH LSHSLSPHER QDLDNFLGQY LLVLCSFKEQ  120
LQQHVRVHAV EAVMACREIE QNLQALTGIN IGEGSGATMS DDEDELQMDF SLDQSGADGH  180
DMMGFGPLLP TESERSLMER VRQELKLELK QGFRSRIEDV REEILRKRRA GKLPGDTTSV  240
LKNWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSSSQ SVTSLKSKRK  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12227283864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280300RKRNWHSSSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084710.10.0homeobox protein HD1-like
SwissprotQ9FPQ81e-171KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A068UQE90.0A0A068UQE9_COFCA; Uncharacterized protein
STRINGXP_008437194.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-161KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]