PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g12670

Common Name

GSCOC_T00030446001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 770aa MW: 83338.9 Da PI: 5.3735

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g12670	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	289.8	7.2e-89	408	768	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++L+++ e v +g+++ aq +Larl+++ sp+ +p+qR+a+yf+eAL+ l+ ++ +l+ + + + ++ a+k++sevsP+++f ++t Nq Cc08_g12670 408 DQLYKATELVLAGNFSHAQGILARLNHQLSPAVKPFQRAAFYFKEALQLLLLLPNRAISPSLRIPTPL--DGIFKMGAYKMLSEVSPLIQFKNFTSNQ 503 689***********************************************9888888887666654..6*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrv 196 a+lea++ + +HiiDfdi+ G+QW +++q+L +++g+ sl+iT+++sp++ ++ e++ ++e L++fA+ lg++fe +v+ ++++ + +++r Cc08_g12670 504 ALLEALDDAANIHIIDFDIGCGAQWSSFMQELPRKNRGATSLKITAFASPSAYHSVEISLMHESLTHFANDLGLKFELEVVNFDSFDPSgySASSFRS 601 ****************************************************************************977766654337888999 PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++ +++aVn+ l + ++++ l+s +L ++k+lsPk+vv+ ++ +++ + + +++l+al+yy +++ds++a +s++ +k+Er+l+++ + Cc08_g12670 602 SESDTIAVNFPLWS--VSSRPTILPS----LLCFIKQLSPKIVVMLDHGCERFELPPSHHLLNALQYYEVFLDSVDAA-NMASDAVNKIERFLIQPTV 692 99****9944..4434555555....*****************************************766.57999********** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++v + ++ ++ W + + +aGF++vp+s++a++qa++++++ +++g++ve++++slvl W++r+L+s+S+W+ Cc08_g12670 693 ESIVFGRLQS----PNQIPPWTNLFASAGFSSVPISNFAETQAECVVKRSQVRGFHVEKRQASLVLSWQRRELLSASVWK 768 887776....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.52	380	748	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-86	408	768	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MLGMQYNTNL QTKGVLEVGC FASSISSAEA KCKKDGNFTS NEPISVLDTR SPSPSTSTST 60 LSSSFGGTNG GGTSENTPNL VVGSHRNTLK GAAPLDPITT ASATNGEGGG VKEEWVTELP 120 AGLELSQDGP ERYNLGLEDW ETFLCESTGQ DQSLIRWIAG DIEDPSFSMK QLLQGGNSNE 180 IESNVGVGGI DQSSGFEALA TGGCTADNGN VLPTLSSSPL GLSGSGNSFD SNNGKFGSVP 240 SSLNSNNKNG NSQNLFPLPP NSSLGMPDGV NVAHQQQLQF ATIPEQKSPN FMPHVMISTP 300 QFQNAPNLNL LNSLLSCTNQ DQPQPKRQNL GILNPAASSQ IPKVPLLDPD PNLLLRKQQE 360 LQFGLGQQLN SLPSSNPQQK PFIVPKQEVA EGNGNLLVAR HQQQVVYDQL YKATELVLAG 420 NFSHAQGILA RLNHQLSPAV KPFQRAAFYF KEALQLLLLL PNRAISPSLR IPTPLDGIFK 480 MGAYKMLSEV SPLIQFKNFT SNQALLEALD DAANIHIIDF DIGCGAQWSS FMQELPRKNR 540 GATSLKITAF ASPSAYHSVE ISLMHESLTH FANDLGLKFE LEVVNFDSFD PSGYSASSFR 600 SSESDTIAVN FPLWSVSSRP TILPSLLCFI KQLSPKIVVM LDHGCERFEL PPSHHLLNAL 660 QYYEVFLDSV DAANMASDAV NKIERFLIQP TVESIVFGRL QSPNQIPPWT NLFASAGFSS 720 VPISNFAETQ AECVVKRSQV RGFHVEKRQA SLVLSWQRRE LLSASVWKC*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MLGMQYNTNL QTKGVLEVGC FASSISSAEA KCKKDGNFTS NEPISVLDTR SPSPSTSTST  60
LSSSFGGTNG GGTSENTPNL VVGSHRNTLK GAAPLDPITT ASATNGEGGG VKEEWVTELP  120
AGLELSQDGP ERYNLGLEDW ETFLCESTGQ DQSLIRWIAG DIEDPSFSMK QLLQGGNSNE  180
IESNVGVGGI DQSSGFEALA TGGCTADNGN VLPTLSSSPL GLSGSGNSFD SNNGKFGSVP  240
SSLNSNNKNG NSQNLFPLPP NSSLGMPDGV NVAHQQQLQF ATIPEQKSPN FMPHVMISTP  300
QFQNAPNLNL LNSLLSCTNQ DQPQPKRQNL GILNPAASSQ IPKVPLLDPD PNLLLRKQQE  360
LQFGLGQQLN SLPSSNPQQK PFIVPKQEVA EGNGNLLVAR HQQQVVYDQL YKATELVLAG  420
NFSHAQGILA RLNHQLSPAV KPFQRAAFYF KEALQLLLLL PNRAISPSLR IPTPLDGIFK  480
MGAYKMLSEV SPLIQFKNFT SNQALLEALD DAANIHIIDF DIGCGAQWSS FMQELPRKNR  540
GATSLKITAF ASPSAYHSVE ISLMHESLTH FANDLGLKFE LEVVNFDSFD PSGYSASSFR  600
SSESDTIAVN FPLWSVSSRP TILPSLLCFI KQLSPKIVVM LDHGCERFEL PPSHHLLNAL  660
QYYEVFLDSV DAANMASDAV NKIERFLIQP TVESIVFGRL QSPNQIPPWT NLFASAGFSS  720
VPISNFAETQ AECVVKRSQV RGFHVEKRQA SLVLSWQRRE LLSASVWKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-26	425	768	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027180935.1	0.0	scarecrow-like protein 27
TrEMBL	A0A068UNP8	0.0	A0A068UNP8_COFCA; Uncharacterized protein
STRING	XP_009803487.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6986	19	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-95	GRAS family protein