PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g12180
Common NameGSCOC_T00030516001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 1020aa    MW: 115328 Da    PI: 8.0508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g12180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-18834881148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +l+++++ +G + Wkt+a + g++R++++c++rw++yl
      Cc08_g12180 834 KGAWTAEEDRKLAEYIETHGAKKWKTVATKSGLNRCGESCRLRWLNYL 881
                      79********************************************97 PP
2Myb_DNA-binding50.26e-16887932148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
      Cc08_g12180 887 KGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 932
                      6889******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF147249.8E-699187IPR024129Sphingomyelin phosphodiesterase 4
PROSITE profilePS5129416.643831881IPR017930Myb domain
SuperFamilySSF466893.23E-28833928IPR009057Homeodomain-like
SMARTSM007172.4E-15833883IPR001005SANT/Myb domain
PfamPF002495.3E-16834881IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-23835888IPR009057Homeodomain-like
CDDcd001675.40E-11836881No hitNo description
PROSITE profilePS5129426.401882936IPR017930Myb domain
SMARTSM007178.7E-16886934IPR001005SANT/Myb domain
PfamPF002493.5E-14887932IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-24889936IPR009057Homeodomain-like
CDDcd001679.59E-11891932No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0050290Molecular Functionsphingomyelin phosphodiesterase D activity
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MIGHSYGMDA QEKATELETT ILAAASPPQI AAACSGVEAF LQKHTPDQSR WFFSITFPTL  60
ICKTFGFDES SLPSKSQSPN GWIDIAMLSG DSELAGKIFS LLSPNGVLMS SISAVDRLSL  120
VKYVFPIERL PEWVRYMLQN KRDCQVLMDL CPLFRNKVKE DSLKGSPCQV QLNVLEYFWF  180
WFVYYPVCKG SSDGSDGARV RRSRKFRLEN WAYSIPGLCS SKRGMEQKND VNLYCRLLYA  240
YLRAFVPMVD LSAHQPYRSS LLHYSWGHDT SVIERAEFLV NSLIHFWLVD NDFSPLPMSL  300
CKSYGVTLPF RSIFGETPPA SGLGEVITLF VKYLTLNSVL CIEGHDKFGC NGYPPRKVSG  360
SVDVINSKEI TLDFTSNNSW NIWVQRPLYR FVLRTFLFCP VESSIKNVSQ VFTVWVTYME  420
PWKVNLQEFA ELDATLGMPQ KSTSEVTQTS ENGYSTAWQT YVLANYLYYS SLVMHFFGFA  480
HKFLHTDPEV IIQMVSKVIN LLTSSTELMD LIKIMDTAYH SKPTGSSKLV PNALYSFVPA  540
IREQLQDWEN GLCETAVDGS FLHDNWNKDL RLFSGGEDGG QQLLQLFVLR AESELQAISG  600
DNVAQSLKCL DSLKAQLSCL FGGPILGSSS RTPEKREHVH TRDEMFRPRS FGHHMVSEVK  660
YKGDWMKRPI SDDEIAWLAK LLVDLSAWLN ESLGLNQVNS SQGWPAWSYV DLSGNAGNVS  720
GFMDTMKIVF LSLFSWFTAL GKAGLMFMRK RGLKVNLRIL ASKKIVMVLL MVAAFSISQH  780
VYYHFISISN STQYVKKFWT KISFYFITLL YCYCHFICLD YISPPKKKCL FCRKGAWTAE  840
EDRKLAEYIE THGAKKWKTV ATKSGLNRCG ESCRLRWLNY LRPNIKKGNI SPDEEDLIVR  900
LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKKIYSTK ITDGTTGAPA APPPTTMAKV  960
QVEVQATHHH ESQADNTELS FGVGDSLDDS VEGTSAMDCI IKFLELDENP PPPGPKPLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-288349367108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027180909.10.0uncharacterized protein LOC113779520
TrEMBLA0A068UNG50.0A0A068UNG5_COFCA; Uncharacterized protein
STRINGXP_009785492.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.12e-47myb domain protein 23