PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g12160
Common NameGSCOC_T00030518001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 224aa    MW: 25046.7 Da    PI: 5.8167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g12160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-184696256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  y+GVr+++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g+
  Cc08_g12160 46 TYHGVRRRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 96
                 69****887.**********843...6**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-2146104IPR016177DNA-binding domain
PfamPF008474.5E-134696IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3146104IPR001471AP2/ERF domain
SMARTSM003802.0E-3446109IPR001471AP2/ERF domain
PROSITE profilePS5103222.41846103IPR001471AP2/ERF domain
PRINTSPR003671.1E-94758IPR001471AP2/ERF domain
CDDcd000187.40E-3047105No hitNo description
PRINTSPR003671.1E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKGNEQQTSS TSYDPSIRPD AAKEDTRSKR AKKNDHLDAR KGENPTYHGV RRRSWGKWVS  60
EIREPRKKSR IWLGTFATPE MAARAHDVAA IAIKGHSAFL NFPDLAHQLP RPASKLPKDI  120
QAAAAKAAAL AAPTSHDDRE LSPDKLEEPY SPEGTVTSDS SASPVLSHNG RDDDPFLDLP  180
DLFFDLSDHQ FDEFCYKSPW QLAGYESTEG ELWTEDLFLW DHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-17431031172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027183044.11e-164ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ74e-45ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A068UQV01e-163A0A068UQV0_COFCA; Uncharacterized protein
STRINGPOPTR_0001s15550.12e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]