PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g11920 | ||||||||
Common Name | GSCOC_T00030555001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 388aa MW: 43311.1 Da PI: 7.0071 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 234 | 284 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r++lg+f+ta eAaka+++a+ k++g Cc08_g11920 234 HYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFKMRG 284 7********.**********96554..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 233 | 293 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 234 | 293 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-37 | 234 | 298 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 234 | 292 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-14 | 234 | 284 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.04E-31 | 234 | 292 | No hit | No description |
PRINTS | PR00367 | 1.8E-13 | 235 | 246 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 274 | 294 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MATPDEVLAL RQIQEHLFGE LSPTALFFGP ELVIDGDSNL GASNYSSQSQ SQSDSSFGSD 60 SASYDHDHNS NSNSSPSSPV PITDYLSTAD EAERKQNHCF DHFAQNSVSF ERNDPDFFKH 120 CQTNTIINFS RAPKFETIDF SEFEQKPQVI DLTSSPKPPQ SARDGKPSPT ILPPVKQCAR 180 DRKPSLTILP PVKKFEWIEF SESTQSKQVI EQARQMSLPT QSTQPKKAAE DQRHYRGVRQ 240 RPWGKYAAEI RDPKRRGSRV WLGTFDTAIE AAKAYDRAAF KMRGSKAILN FPLEAGKHAS 300 ESRASSSNKR RREAEERGRE AEEVAVKEAK KCQTPSAVKS EPESEWPFTP SSWSAMWEQN 360 VDGVFNFSPL SPVSPHPPLG CAQVRVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-28 | 233 | 293 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027084196.1 | 0.0 | ethylene-responsive transcription factor 6-like | ||||
Refseq | XP_027100852.1 | 0.0 | ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A068UNX0 | 0.0 | A0A068UNX0_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 9e-44 | ethylene responsive element binding factor 6 |