PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g10810
Common NameGSCOC_T00027060001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 365aa    MW: 41137 Da    PI: 4.6141
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g10810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.7e-36491402102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed++++++isws+  nsfvv+d+++f++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+k+ll++i+
   Cc08_g10810  49 FLTKTFDMVEDPSTDSVISWSKARNSFVVWDSHKFSTSLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLGGQKHLLKTIR 136
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Cc08_g10810 137 RRRN 140
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3845138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-6145138IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MENVTIKIEE EEEGFVFPFS DGGSTGATAG SSSSPRPMEG LHDMGPPPFL TKTFDMVEDP  60
STDSVISWSK ARNSFVVWDS HKFSTSLLPK YFKHSNFSSF VRQLNTYGFR KVDPDRWEFA  120
NECFLGGQKH LLKTIRRRRN VIPSITQQEG GGPCVELGHY DLEEEIERLK SDRNSLMAEV  180
IKLKQQQQTA RDHVMAMDER IKGTEKKQQQ TMSFLARAFS NPTFLQPYVD RHRQRQEQQR  240
IQIGHKRRLT MTPSVENLQE VASIAADADQ LLNDSGGEQE LVNMQREMET LLFTAALDDE  300
PSSIVNLNSP SIPTSTEVVL LGDQPEADVE VEDLVAETPE WGEGFSDLVD QMGYLIAKPD  360
DTSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-274713827129Heat shock factor protein 1
5d5v_B3e-274713827129Heat shock factor protein 1
5d5v_D3e-274713827129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084719.10.0heat shock factor protein HSF30-like
RefseqXP_027084720.10.0heat shock factor protein HSF30-like
RefseqXP_027084721.10.0heat shock factor protein HSF30-like
RefseqXP_027084722.10.0heat shock factor protein HSF30-like
RefseqXP_027084723.10.0heat shock factor protein HSF30-like
RefseqXP_027084725.10.0heat shock factor protein HSF30-like
RefseqXP_027084726.10.0heat shock factor protein HSF30-like
RefseqXP_027084727.10.0heat shock factor protein HSF30-like
RefseqXP_027084728.10.0heat shock factor protein HSF30-like
SwissprotP411521e-138HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A068UIC40.0A0A068UIC4_COFCA; Uncharacterized protein
STRINGXP_009612082.11e-155(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-112heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]