PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g10730
Common NameGSCOC_T00027049001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 508aa    MW: 54549 Da    PI: 9.6627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g10730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-057799123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Cc08_g10730 77 FICEICNKGFQRDQNLQLHRRGH 99
                 89*******************88 PP
2zf-C2H212.50.00045154176123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k H + +
  Cc08_g10730 154 WKCEKCSKRYAVQSDWKAHSKIC 176
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-77699No hitNo description
Gene3DG3DSA:3.30.160.601.3E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0227799IPR015880Zinc finger, C2H2-like
PfamPF121716.1E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8457799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355100119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5141175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7149174No hitNo description
SMARTSM00355130154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSNLTSGSND ASISSGNRLE IGAVYPQQQQ QPPLASSPTN QSAQPASKKK RNLPGNPDPE  60
AEVIALSPRT LLATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEVIRKKVYI  120
CPETTCVHHD PSRALGDLTG VKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSKICGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITTNNHPL GLLGGGGNST TSSVQLHLQN  240
HPLHGGGLPV FPLKREQDQL QLQLQRQQSF NSNLRPPELP PWLSDPGGGP PTSHDLFSNP  300
RLDQTMNHHH ENVNNPNPNP TLSSSFQAAA ASASPHMSAT ALLQKAAQMG VTISKPASSQ  360
SAAGADEVAA LASATTTMLR PHQAAHVSTG LMGSTSIILA TSTAGSSLGL ASREDQMGIG  420
SSSGSGLMHH HGLMASFGNK TSAITSAEGG VFGGRGNNIN DGLTRDFLGL KAFPAARETF  480
LSLDDLHQLG GSSFNDQQGH HNPAAPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35150218371Zinc finger protein JACKDAW
5b3h_F1e-35150218371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116KLKQRSNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084733.10.0protein indeterminate-domain 7-like
RefseqXP_027084734.10.0protein indeterminate-domain 7-like
TrEMBLA0A068UJ220.0A0A068UJ22_COFCA; Uncharacterized protein
STRINGEOY299171e-165(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-116indeterminate(ID)-domain 7