PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc08_g10080 | ||||||||
Common Name | GSCOC_T00026967001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 27203.2 Da PI: 6.512 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.3e-14 | 14 | 86 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqk 46 rg+W++eEd++l++ G+g +W+ Ia+ ++ gRt++++k++w++ Cc08_g10080 14 RGPWSPEEDQILKKHLLDSGTGgnwitlpqkaassnypsffvtsnivlnrRWSIIASQLP-GRTDNDVKNHWNS 86 89**********************************************************.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 5 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.622 | 9 | 92 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-13 | 13 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.39E-11 | 14 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.76E-8 | 16 | 88 | No hit | No description |
Pfam | PF00249 | 1.6E-6 | 62 | 86 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRTPCCDKT KVKRGPWSPE EDQILKKHLL DSGTGGNWIT LPQKAASSNY PSFFVTSNIV 60 LNRRWSIIAS QLPGRTDNDV KNHWNSKLKK KQLAASFRKP ASNTTNDNSS RPASFTSTTS 120 TTTPYSLETQ AGAFHPNFSA PLSNLSTEDC TDISVGTEGS KVCSSISKTI EYMSSSSQAQ 180 EDSIISESTS FGTITNTINN SMPWLDDYGA IDRGLPMEMT GTAAYSYEIL SGIWSRETVL 240 EALHDPYF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027082805.1 | 1e-150 | transcription factor RAX2-like | ||||
TrEMBL | A0A068UIY1 | 0.0 | A0A068UIY1_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15590 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65790.1 | 4e-32 | myb domain protein 68 |